XLOC_013362


Basic Information

Item Value
gene id XLOC_013362
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18744462 ~ 18749405 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027289
ATGGACTCTTCACTGACTGCTGCACAGATCCGTGAGAAGTTCATCGACTTCTTCCGCTGCCATGAACACCAGTATGTCCACTCGTCAGCCACCATTCCAGTGCCTAATTGGTTAAAGAACATTACCTGTAAATGTTATCATTATTctgatagtttaaactgtagaacacaaaGATATTACTTTCAGTTTTTGAATGTAAAAGGAAGGCAGAATTTCACCGTAAATTGCAATATCATAGATAAATGTTATTGTTTCCTAAAagatgaaaGATTATCTATATGGGTTAAAATgactaattttaattataatacaagTTGTAGAATTGATATGTCTCTCTGTATCAGAATGGAGGAGAGCCGTATTCTGCCTGGCAGCATGAAGGATAACTTCTGGGAGATGGGGGACACTGGTCCATGTGGGCCGTGCAGTGAGATCCACTATGATCACATTGGAGGCAGAGATGCTGCACACCTGGTCAACATGGATGACCCAAATAAGCTTGAAATCTGGAATTTGGTGTTCATCCAATTCAACAGAGAATCAGAGACCGTGCTTAAGCCTCTGCCCAAGAAGAGCATCAACACAATTGCTAcgtacaaacatatcataaataaagtgaaattatGCAACTTGTGTAGCAGTTTCTTCAAACATTTTACAAaggagtgtttatttaaaaaagtgtgcccacttaCTGCAGTACATTTTGTGTGTAAGCAGCATACGCCTCAACTATGCTCAAAAATTACATCCATTCTTTATTCTTTGAATCAATACAACTTAGCAATACTTAATTATCAACAATTAATCTACATCAACATCAATACTGTGCACTTTTATTGCTCTTTTCAGGGTGATGCTTTTCCAGAGCTGCTGAAAGATCCTGATATGGTAAAGGATATCATCAATGAGAAAGAGGCACAGTTCCTTAAAACCCTCAGCAGAGGACGCCGCATCCTAGACCGCAAGATCCAGAGTCTCGGAGAAAGCACAACTATACCAG
>TCONS_00026410
ATGGACTCTTCACTGACTGCTGCACAGATCCGTGAGAAGTTCATCGACTTCTTCCGCTGCCATGAACACCAGTATGTCCACTCGTCAGCCACCATTCCACTGGATGACCCCACGCTGCTCTTCGCCAATGCCGGAATGAACCAAAATGGAGGAGAGCCGTATTCTGCCTGGCAGCATGAAGGATAACTTCTGGGAGATGGGGGACACTGGTCCATGTGGGCCGTGCAGTGAGATCCACTATGATCACATTGGAGGCAGAGATGCTGCACACCTGGTCAACATGGATGACCCAAATAAGCTTGAAATCTGGAATTTGGTGTTCATCCAATTCAACAGAGAATCAGAGACCGTGCTTAAGCCTCTGCCCAAGAAGAGCATCAACAGGTGATGCTTTTCCAGAGCTGCTGAAAGATCCTGATATGGTAAAGGATATCATCAATGAGAAAGAGGCACAGTTCCTTAAAACCCTCAGCAGAGGACGCCGCATCCTAGACCGCAAGATCCAGAGTCTCGGAGAAAGCACAACTATACCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000093239

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027289 False 1003 lncRNA 0.39 10 18744462 18749405
TCONS_00026410 True 534 unprocessed_pseudogene 0.50 4 18744462 18749405

Neighbor

gene id symbol gene type direction distance location
XLOC_013361 NA coding downstream 17430 18713973 ~ 18727032 (-)
XLOC_013360 BX649641.5 coding downstream 42698 18696207 ~ 18701764 (-)
XLOC_013358 NA coding downstream 109789 18629066 ~ 18634673 (-)
XLOC_013357 BX470163.1 coding downstream 166568 18577814 ~ 18577894 (-)
XLOC_013356 BX470163.2 coding downstream 166913 18577474 ~ 18577549 (-)
XLOC_013363 NA coding upstream 37979 18787384 ~ 18793265 (-)
XLOC_013364 tgm2l coding upstream 54134 18803539 ~ 18850302 (-)
XLOC_013365 arl2bp coding upstream 121220 18870625 ~ 18875308 (-)
XLOC_013366 NA coding upstream 126985 18876390 ~ 18878724 (-)
XLOC_013367 si:dkey-73n10.1 coding upstream 182079 18931484 ~ 18942098 (-)
XLOC_013384 BX323829.1 misc upstream 792697 19542102 ~ 19542231 (-)
XLOC_013371 BX908395.1 non-coding upstream 360642 19110047 ~ 19111916 (-)
XLOC_013373 CR788229.1 non-coding upstream 625434 19374839 ~ 19374955 (-)
XLOC_013374 CT863714.6 non-coding upstream 673606 19423011 ~ 19423128 (-)

Expression


Co-expression Network