XLOC_013363


Basic Information

Item Value
gene id XLOC_013363
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18787384 ~ 18793265 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027290
ATGGACTCTTCACTGACTGCTGCACAGATCCGTGAGAAGTTCATCGACTTCTTCCGCCGCCATGAACACCAGTATGTCCACTCGTCAGCCACCATTCCACTGGATGACCCCACGCTGCTCTTCGCCAATGCCGGAATGAATATTACATGtaaatgttatcattattttgatagtttaaactgtagaacacaaaataaattgttggaaactggtagcttattaaGATATTACTTTCagtttgtgaatgtaaaaggaAGGCAGAATTTCACCGTAAATTGCAATATTAAAAAGAAGAAATTATCACTTTTTTTATTGTCATCTGTcttttttatagtttatagTAGATTATCTATATGGGTTAAAATGACCgattttaattataatacaagTTGTAGAATTGATGTAAATTTGTTTATATTCTTTCTGTATCAGAATGTAAGAGAGCCGTATTCTGCCTGGCAGCATGAAGGATAACTTCTGGGAGATGGGGGACACTGGTCCATGTGGGCCGTGCAGTGAGATCCACTATGATCGCATTGGAGGCAGAGATGCTGCACACCTGGTCAACATGGATGACCCAAATGAGCTTGAAATCTGGAATTTGGTGTTCATCCAATTCAACAGAGAATCAGAGACCGTGCTTAAGCCTCTTTCCAAGAAGAGCATCGACACAGGGATGGGACTTGAGCGCTTGGTCTCTGTTCTACAAAACAAGATGTCTAACTACGACACTGACCTCTTCGTTCCTTATTTTGAAGCCATTCAGAAGGGCACAGGTGCAAGAGCATACACAGGAAAGGTTAGTGCAGAAGACACCGATGGCATCGATATGGCATACCGTGTCCTGGCTGATCATGCCCGCACCATTACAATCGCCTTGTATGATGGTGGCAGACCTGACAACACTGGCAGAGGGTCTTTTATTTTCCCAAATGTGCATAGAATATTGTGCAGATTAAGTTTCTTCAAACATTTTACAAaggagtgtttatttaaaaaagtgtgcccacTTTATTGCTCTTTTCAGGGTGATGCTTTTCCAGAGCTGCGGAAAGATCCTTATATGGTAAAGGATATCATCAATGAGGAAGAGGCACAGTTCCTTAAAACCCTCAGCAGAGGACGCCGCATCCTAGACCGCAAGATCCAGAGTCTCGGAGAAAGCACAACTATACCAG
>TCONS_00026411
ATGGACTCTTCACTGACTGCTGCACAGATCCGTGAGAAGTTCATCGACTTCTTCCGCCGCCATGAACACCAGTATGTCCACTCGTCAGCCACCATTCCACTGGATGACCCCACGCTGCTCTTCGCCAATGCCGGAATGAACCAAAGCCGTATTCTGCCTGGCAGCATGAAGGATAACTTCTGGGAGATGGGGGACACTGGTCCATGTGGGCCGTGCAGTGAGATCCACTATGATCGCATTGGAGGCAGAGATGCTGCACACCTGGTCAACATGGATGACCCAAATGAGCTTGAAATCTGGAATTTGGTGTTCATCCAATTCAACAGAGAATCAGAGACCGTGCTTAAGCCTCTTTCCAAGAAGAGCATCGACACAGGGATGGGACTTGAGCGCTTGGTCTCTGTTCTACAAAACAAGATGTCTAACTACGACACTGACCTCTTCGTTCCTTATTTTGAAGCCATTCAGAAGGGCACAGGTGCAAGAGCATACACAGGAAAGGTTAGTGCAGAAGACACCGATGGCATCGATATGGCATACCGTGTCCTGGCTGATCATGCCCGCACCATTACAATCGCCTTGTATGATGGTGGCAGACCTGACAACACTGGCAGAGGGGTGATGCTTTTCCAGAGCTGCGGAAAGATCCTTATATGGTAAAGGATATCATCAATGAGGAAGAGGCACAGTTCCTTAAAACCCTCAGCAGAGGACGCCGCATCCTAGACCGCAAGATCCAGAGTCTCGGAGAAAGCACAACTATACCAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000094658

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027290 False 1178 lncRNA 0.42 11 18787384 18793265
TCONS_00026411 True 768 unprocessed_pseudogene 0.50 5 18787384 18793265

Neighbor

gene id symbol gene type direction distance location
XLOC_013362 NA coding downstream 37979 18744462 ~ 18749405 (-)
XLOC_013361 NA coding downstream 60352 18713973 ~ 18727032 (-)
XLOC_013360 BX649641.5 coding downstream 85620 18696207 ~ 18701764 (-)
XLOC_013358 NA coding downstream 152711 18629066 ~ 18634673 (-)
XLOC_013357 BX470163.1 coding downstream 209490 18577814 ~ 18577894 (-)
XLOC_013364 tgm2l coding upstream 10274 18803539 ~ 18850302 (-)
XLOC_013365 arl2bp coding upstream 77360 18870625 ~ 18875308 (-)
XLOC_013366 NA coding upstream 83125 18876390 ~ 18878724 (-)
XLOC_013367 si:dkey-73n10.1 coding upstream 138219 18931484 ~ 18942098 (-)
XLOC_013368 ppcdc coding upstream 182274 18975539 ~ 18979520 (-)
XLOC_013384 BX323829.1 misc upstream 748837 19542102 ~ 19542231 (-)
XLOC_013371 BX908395.1 non-coding upstream 316782 19110047 ~ 19111916 (-)
XLOC_013373 CR788229.1 non-coding upstream 581574 19374839 ~ 19374955 (-)
XLOC_013374 CT863714.6 non-coding upstream 629746 19423011 ~ 19423128 (-)
XLOC_013376 CT863714.5 non-coding upstream 658317 19451582 ~ 19451651 (-)

Expression


Co-expression Network