XLOC_013365 (arl2bp)


Basic Information

Item Value
gene id XLOC_013365
gene name arl2bp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18870625 ~ 18875308 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026416
GTTTTAAGCATGTACGCGTGCTCTTGTTGCCGTGGCAGCAGCGACTTCAGGAAGGACGTCGGGCGATTAATGATGGATGCTCGAGAGTCggATCTGCTAGGCGGCAACGAGAACATGGTTGACATGCAGAGCTTGGATGAAGAGGACTTTTCTGTTTCAAAATCATCAGATGCTGATGCAGAATTTGACATAGTAATTGGGAACATCGAGGACATTATAATGGAGGATGAGTTCCAGCATCTTCAACAGTCTTTTATGGAGAAATATTACCTTGAGTTTGATGACTCAGAGGAGAACAAGCTCAGCTATACACCCATTTTTAACGAATATATTGAAATCCTAGAGAAGCATCTGGAACAGCAGTTGGTGGAACGAATTCCTGGGTTCAACATGGATGCCTTCACCCATTCACTTAAACAGCACAAAGATGAGGTCTCAGGTGACATACTTGACATGCTGCTTACTTTCACTGATTTTATGGCCTTTAAAGAGATGTTCACTGACTACAGAGCTGAAAAGGAGGGCAGAGGATTGGATCTTAGCACCGGACTAGTGGTAAAGTCTTTAAATTCTTCCTCGGCTTCACCTTTGACCCCCAGCATGGCCTCACAGTCCATCTGAGCCAGCTAAATGCGAAGATTTAAAGTAAATGAACTTGTTTAAGTGGCACAAATGATTACGCTTATTTACAAAAAGATGAATATTTATTGAACAAGCCTTTCTGATGCATCCCAAAACAAACAGTCATGTTATGGTAACCTCTCCAATGGGAATCTGTGTTTGGTTTAAGGTTAATGTTTAAACGTCACAGTCAGGTGAACTGTCAGCTTATCCTGTATGATTCTTCTTGCAGTATTCTTATGATGGACTCAATATTCATGCCTTTTTGGCCTACAGAGCAGCAAAAATAAGAATATGGTGATGTGCATGTAAAGCTGCTACTTTATTGCATATTAAGAACCCCACAGtttaatatataattgtatacaaAGATGACGACTTTCGCTTGACAACCATAAAGGGCTTTTCAGTAGAAAGTATTATAAAATGTGCCTGATGTGATGACAGTTTTTAAAGACCCTTTTATTCATTCACAAAGCTTCCctaggttaaaaaaaatctgaaaaatctatattttaaccATAACAATGCAAATAATCTCATAGATTTTTAATATGATGTTGAGTCAAGTTTTGGATTGCTCTTATACGTTCTGAGAAGCAGAATGACTCAAAATAGCCTGTTTTGAATAGTGCAAATTTCAGCCTTTTCACTCCTCCTAGACTGTGTTGTTCTGACTAGATGAATGTTTCGTAAATTGTGTATATTTGTTTACTATTTGTATATATAGACATATTTGAACATGTCAGTTGAAGAAATAAATACAGTGGTTCTTTAA
>TCONS_00026417
ATGCAGAGCTTGGATGAAGAGGACTTTTCTGTTTCAAAATCATCAGATGCTGATGCAGAATTTGACATAGTAATTGGGAACATCGAGGACATTATAATGGAGGATGAGTTCCAGCATCTTCAACAGTCTTTTATGGAGAAATATTACCTTGAGTTTGATGACTCAGAGGAGAACAAGCTCAGCTATACACCCATTTTTAACGAATATATTGAAATCCTAGAGAAGCATCTGGAACAGCAGTTGGTGGAACGAATTCCTGGGTTCAACATGGATGCCTTCACCCATTCACTTAAACAGCACAAAGATGAGGTCTCAGGTGACATACTTGACATGCTGCTTACTTTCACTGATTTTATGGCCTTTAAAGAGATGTTCACTGACTACAGAGCTGAAAAGGAGGGCAGAGGATTGGATCTTAGCACCGGACTAGTGGTAAAGTCTTTAAATTCTTCCTCGGCTTCACCTTTGACCCCCAGCATGGCCTCACAGTCCATCTGA

Function

symbol description
arl2bp Predicted to be involved in maintenance of protein location in nucleus and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in several cellular components, including cilium; microtubule cytoskeleton; and mitochondrion. Predicted to be active in mitochondrial intermembrane space. Human ortholog(s) of this gene implicated in retinitis pigmentosa with or without situs inversus. Orthologous to human ARL2BP (ADP ribosylation factor like GTPase 2 binding protein).

GO:

id name namespace
GO:0051457 maintenance of protein location in nucleus biological_process
GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0042995 cell projection cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-1604 Predicted to be involved in maintenance of protein location in nucleus and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in several cellular components, including cilium; microtubule cytoskeleton; and mitochondrion. Predicted to be active in mitochondrial intermembrane space. Human ortholog(s) of this gene implicated in retinitis pigmentosa with or without situs inversus. Orthologous to human ARL2BP (ADP ribosylation factor like GTPase 2 binding protein).

Ensembl:

ensembl_id ENSDARG00000025383

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026416 False 1399 mRNA 0.38 7 18870625 18875308
TCONS_00026417 True 498 mRNA 0.42 6 18871403 18874921

Neighbor

gene id symbol gene type direction distance location
XLOC_013364 tgm2l coding downstream 20323 18803539 ~ 18850302 (-)
XLOC_013359 aars1 coding downstream 48696 18636273 ~ 18821929 (-)
XLOC_013363 NA coding downstream 77360 18787384 ~ 18793265 (-)
XLOC_013362 NA coding downstream 121220 18744462 ~ 18749405 (-)
XLOC_013361 NA coding downstream 143593 18713973 ~ 18727032 (-)
XLOC_013366 NA coding upstream 1082 18876390 ~ 18878724 (-)
XLOC_013367 si:dkey-73n10.1 coding upstream 56176 18931484 ~ 18942098 (-)
XLOC_013368 ppcdc coding upstream 100231 18975539 ~ 18979520 (-)
XLOC_013369 ints14 coding upstream 119939 18995247 ~ 19006634 (-)
XLOC_013370 dennd4a coding upstream 169531 19044839 ~ 19103929 (-)
XLOC_013384 BX323829.1 misc upstream 666794 19542102 ~ 19542231 (-)
XLOC_013360 BX649641.5 non-coding downstream 168861 18696207 ~ 18701764 (-)
XLOC_013358 NA non-coding downstream 235952 18629066 ~ 18634673 (-)
XLOC_013371 BX908395.1 non-coding upstream 234739 19110047 ~ 19111916 (-)
XLOC_013373 CR788229.1 non-coding upstream 499531 19374839 ~ 19374955 (-)
XLOC_013374 CT863714.6 non-coding upstream 547703 19423011 ~ 19423128 (-)
XLOC_013376 CT863714.5 non-coding upstream 576274 19451582 ~ 19451651 (-)

Expression


Co-expression Network