XLOC_013366


Basic Information

Item Value
gene id XLOC_013366
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18876390 ~ 18878724 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026960
caaacacacaatacagTGTCCTCCTAACACAATAGAGTCTACTATAGACTGTACAATatggtaaattaaattaatagacACCATCaatatgcattaataaaaagcaagtaagttttaaagggatagtttacccagaaCAGAATAATTTGTCACAATTTACTCaccggtaggtagtgctgtcgcctcactgcaagaaggttgctggttcgagcctcggctgggtcagtttgcgtttctgggtggagtttgcatgttttccctgcgtttgcgtgggttttccccccacagaccaaaaacatgcggtacaagtgaattgggtcggctaaattgtccatagtgaatgcgtgtgaatgagtgtatcccaacaaacacacaacgttgcctcaacgtagcgaccttcctacaacgttgtaTCAACATtgcaaaaaggttgaggattctacgttgttgctaaaggttgtcacaacgatgtcataaggttgccatttaaacatcatGAGGGTCGCATGCTTTAGGTTGTGCTTAGGTTGCGTGGACgaccactgtacaacatttactggtcacagctgaatcagtttaaatttcaacaagccgtcgtctcattcatcaacgaccgaggagacgctattttcacatggaggtaatcttctattgataatttctggattttaagtatgtaatgTTTTCAGCTGTTGAATTCACCTCAGATCAGTGTTGCTGTAATTCCCGATCTATGGAAAGAATAATTGAATGAGcgagcaacgccacaactacaggacctcttctttctcttctcataatttaactgcgctccccggtctgctgtattctccagtccagagcttcactgcccagtgtctgaattttaatttataaatttatttatatatatatatatatatatatatatatatttacattttaatgatttcttgtttacttttcttgtttgttt

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0071900 regulation of protein serine/threonine kinase activity biological_process
GO:0043405 regulation of MAP kinase activity biological_process
GO:0043408 regulation of MAPK cascade biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026960 True 955 lncRNA 0.39 5 18876390 18878724

Neighbor

gene id symbol gene type direction distance location
XLOC_013365 arl2bp coding downstream 1082 18870625 ~ 18875308 (-)
XLOC_013364 tgm2l coding downstream 26088 18803539 ~ 18850302 (-)
XLOC_013363 NA coding downstream 83125 18787384 ~ 18793265 (-)
XLOC_013362 NA coding downstream 126985 18744462 ~ 18749405 (-)
XLOC_013361 NA coding downstream 149358 18713973 ~ 18727032 (-)
XLOC_013367 si:dkey-73n10.1 coding upstream 52760 18931484 ~ 18942098 (-)
XLOC_013368 ppcdc coding upstream 96815 18975539 ~ 18979520 (-)
XLOC_013369 ints14 coding upstream 116523 18995247 ~ 19006634 (-)
XLOC_013370 dennd4a coding upstream 166115 19044839 ~ 19103929 (-)
XLOC_013371 BX908395.1 coding upstream 231323 19110047 ~ 19111916 (-)
XLOC_013384 BX323829.1 misc upstream 663378 19542102 ~ 19542231 (-)
XLOC_013360 BX649641.5 non-coding downstream 174626 18696207 ~ 18701764 (-)
XLOC_013358 NA non-coding downstream 241717 18629066 ~ 18634673 (-)
XLOC_013373 CR788229.1 non-coding upstream 496115 19374839 ~ 19374955 (-)
XLOC_013374 CT863714.6 non-coding upstream 544287 19423011 ~ 19423128 (-)
XLOC_013376 CT863714.5 non-coding upstream 572858 19451582 ~ 19451651 (-)
XLOC_013377 CT863714.4 non-coding upstream 573146 19451870 ~ 19451937 (-)
XLOC_013359 aars1 coding downstream 54461 18636273 ~ 18821929 (-)

Expression


Co-expression Network