XLOC_013367 (si:dkey-73n10.1)


Basic Information

Item Value
gene id XLOC_013367
gene name si:dkey-73n10.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18931484 ~ 18942098 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026418
AGCAGCGGCGTTAAAGCATGTCTTTCTGCTCTCCGGTACGAAATTTCTTCATCTTCCAAACAGTCCGGCTTATGTGGTGTTTCAGTTGACATGGATTGGTACGGACGGATAGGGATTGCAGTTCATGAGATATGATTTAGCTGAGTCAAGGTGGAGCTCGGAGTCCAAGATGAGCAATAAGCAGGGACTGGGCTGCATCAACCCTCTTATTCAAAGTAGTATGGAAGGTACCATGGGTACTGTAGTCCCCGCGGGGCTCCCTAAAGCCGACAGCCTGCCACACTATTCCCATGACAAAGCTCTACCAATCAGCAGGGCTTACTTTTCTTACGCTTTAAGTGGACAAGATGCTCTTGACTTTCCTTCTCCATGGGGCCATTCAAAAAGCTGCGTCAGAAATGGGCCAAGTCCAGGGATTCACTCATCGACCTCTGATGGGTCGTTTACAATTCCAGCTGTTTACAGACCTGATAAGCTGCCTTTCCCTGTGGATGCTGGAAATGGGCGCTGTAGTGGACCCCAAGAGTTGGCAGCGAAGCAGAGGCTGGCCTATTATGCCAGCAGTCCAAGACAGCACAGTCCAAGGGCAGCAAGAGTTGTCTCGCCAGTGGCAATTCCTAATGGTCATATTAGAGGCTCTGATGCAGAGAGATGTGTTGGATTGGCTATTCCAAAACCAGTATACAGTCATAGCCCTTGCTGTACTGAGCGTGGCTGTACTGCCGGGCACAACTATGGCATGGAACATGGCCCGCATAGGATGTCCCCTCACATATATGATGAGGATTGGGCTGCTCATTATAGCCGCCTGGCTTATCTGCATAAAAAAGGCCAGGAAGCACTGGCACAACAGAGGGGTTTGCAGTTGGAGCATGGTGTGGAGGGTATAAAGGATGGAAAGACCGGGGGCTACAATACTGGATCGAATGGGCCAAGGAGGCCACTTCCTGTAATGGAACCAAGCTATACTTATAATGCTCCGCATCCATTTATTAGTGCCACACCAGAGTATTGCCATCGTGCCCCAGTTCCTCCACAGATGTACAAGGGATATCCACATGCTTATGACCCAAGGACATTGGCACACCCTGAAGTTTCTTCAAAAGTGTATCAGGGTCGTTCCCCCATATCCAAATACACACCAGTGCCTCCATGTCCCAATATCTATTATCCTCAGAGTCACCCTGAGACTTACAGAACCAATTCCAGTGCTCTTACAAATGAGCATGGTCAGCGCCACCACATGGGTCAGTTTCATTCGCCTAGAACAGACTTGATATCACCACCCTGCTCTGCTGTGCCCACTCACCATCCACTGATCTCAAAATATTCTTCTTATCATCCATATGGGGTCCATTTAACTACTAACCAAGCACCCACCAATGAACAGACACATCCACCTTTTCCAGTGGATCAGTCAGAACGGCCACTTGATTTCTCGACACGAAGGGTCCAGACACCAGACTCTCCTCGAgagctttgtaaaacatatggaaCTTCTGGGGCTTTCCATCCTACTCTATCCCACAACAGATGTCTCAGTAATACCCCTACCACTGAACACTCAGAGGTGCCTGGCTCTTTCACTGGTAGTTCCAAAGAATTTCCCATGAAGTCCAATGAAGAGGTCATGGCGTTCAGGCACTGTATTTCAAATTCACCTGACAATGGTATATTAGCTAAAAGGCCTATAGAGGAACCTGAAACAGACATAGCTAGTAAAAAGCAAAAGACTTACTCAGTCCACCAGTTGTCAGAAGATGAACCTCATTCACCATCATCACCACCAATGCCAGTTATTAATAAAGTTTTTAGCTTGGCTCCATATAAAGTCTATTTAGAAGCTACAGGCATGTTGTCTTCATCAGGGGATTCAAAAAGTCCGAAGCCACAGCCTGAGATGGTGCAGCCTAAACAAGAGGCAGACATTGAAAACTGTAATATACAACCAAATTCTGGCGAAAATAGTCTCAGATTAAAACAAAAAACCCAGACTTTACCAGCTAACAGAGATGATCCAGTTGAAACACCAGACGCTATAAAGATTAAAACAGAAGAAATGGATGAAGGTGATCCGAGTAGTCAATCAGAAATAAAAGAGACAGTTTCTGAGGAGGTAAATCATCAGGAACATGTTTCTGTGCTCAAAGAAGAGCGAGTGGAGTTAGACACAAAATTGTCTGGCTCTCTTTCTTGTAAAGTTGTAGTAAAGAGTGACTATGAAGAAGAAAGCAATCCACCCTCAGTAGAAAATCATGAACTTTCAACATGCAAGACTGGGAATGCTGTGACAGACAGCAAAGAATGCACTCCTGTTCCCACAACACCTCCAGCACCTCCTCCACTGACCAAATTCTCCCTTACCAGAATCCCACCTCATTGCCTGAAATTGTCCAGTTTTAAAATAGTTATCCCTGAGGTCTTAAGATCTCCAAAAACCCAACTCGTGGAAGTTCCTCAATCTCCGATGGAGTCGCGTAAGCCCATTATAACTAGCAGCAAGCATGCCCGTTATCAGTTTATGGAGCTTCACCAGTCCCTCTGTAGACTTTTACACTGCAATGTTACTCAAACCCCATGTCAGGTGCTCAGGGACTGGTTATGCAAACTGGACGTATGTGAGTCAGGCAAAGCTCAGAAAGTTTCTTGCCTCTTGGGGTCAAAAATGAGGGAAGTGTGGCTTAAAGGGGATGAGATGGAGGTGGCTCTTCAAAGGGTGGTCCGCCAGCTTCAAATGTACATTGACATCAGTGAATGCCCCTTTCCTCATGTCATGAGGGCTGGTGCTGTGTTCGTTCCCATGTTGGTGGTCAAAGAGGTGCTGTTTCCTCAGGTTCAAGGCACATATATAGACCAGGTTCTTCAGGAGCATCGGGTGGAGCTCCGGCCCACCACGCTCTCAGAGGAAAGGCAACTCACTCAACTCCACAGAAAGGCTTTCTCTTCAAAACTCCGGAGACTTCTGTCCCTTAAACACCTGCCTGACATATACCCTGATGTCCTCAACCTCCTCTACTATGCCAATGTCTGCAAGTTCCTCGATTCCACTGCTACAGATGGTGTCCAAAAAACGCCCAGGAGCTGAAACCAGCTTAACCGTCAAGAGAGAGAGCACTGACAGCACAGATGAATCCACCAGCTGTGTGAATGAAGCTGAAGAATTTAACCTCGAGTCCTCCACAACACTTACACCCCAAACCACTCTCGTAGAACAAACATACTGcctgaaaacaaagaagaaaaGCAGGGTAAAGATCTCCTCCAAGAGGACATTTTTAGACCACAGCAGCTCATCTGAAGAGGACGAATCCAGCGCAGGACCCAGAAGGTGGAGCGTCATCAGCTCCGTACGCAATCGGGATCAATGGGAAATCACAAATCAGTGGGAAATATCTTCATGCAGCCACACAGAGCCCCATGTTGAAGTAATGATTGAAGACGAAAGCCAGGATCACGAGCCATGGGGGCGACCTTTGACCTCTGACGACCTGACCTCAGGCGAAGAGACGGAAAGCACATCATCAAAGTCCAGCCGCAGATCCAGCATGGTCCTCAAACTAAGGAAGGTTGTCTACAAAGAAGCTCATGGAGGCAGAATCGCCCACTACCAAAAAGTCACTGATTCTTCTTCTGGGTTTACAAAAGGAGACAGGAAAGGGAAGGGCAAATCATCTCGAAACAAAAGACACCACACGGACCGGGACTTTTCGTTCAGGTCTTACACTCAAAACCGTTCCTACCTCTCCAAAAAACGCTGCCGATGGGTCCTGCGCTCTGCCGTCCAGTCAGCCCATCTGGAGAACATATATCCTGATCTAGTGGGCAAGAGGATCCGACATTTATATGAGGAAAACGATAAAAGTGAAGTTTGGTATCGAGGAGTCGTGCTGCGCATTCACGAGCCGCACAGCAACCCATTGAAAACCGTGTTTGAGGTTAAATATGACAGCGAGCCCGAGTGGCAGTACTATCTGGAGCTGCTGGTGGATTATAAGAAAGGATGGCTGAAAGTCGAGGACTAGGTTTTTATGGTATTACGGTTTTATTTTTGCACCTGATATTTGGAAAATGTGACGATGCTGAATTGATGAGCAGTAAAAACTTGACACATTCGGGGAGATGTGTTTGTGTAAGCAGTGCGTGTGTGACTCTTTGTGTGTTTCTGGTGTCAATATTGTCTCTGTTGTCGTTGTTTTTATGGAGTTGTTGGCAGACATTCCCAGCTGGTGACATCACATGTTGGCATGCATGTGATTGGAGGAAGGGGAATGTAGTTCAGCAAGATGTTTCACTGTTTAcagaattatttttatattggcTGCTgtcatgtgtttttaaaaataaaacaaaatattaaatcca
>TCONS_00026419
TTGGGGTCAAAAATGAGGGAAGTGTGGCTTAAAGGGGATGAGATGGAGGTGGCTCTTCAAAGGGTGGTCCGCCAGCTTCAAATGTACATTGACATCAGTGAATGCCCCTTTCCTCATGTCATGAGGGCTGGTGCTGTGTTCGTTCCCATGTTGGTGGTCAAAGAGGTGCTGTTTCCTCAGGTTCAAGGCACATATATAGACCAGGTTCTTCAGGAGCATCGGGTGGAGCTCCGGCCCACCACGCTCTCAGAGGAAAGGCAACTCACTCAACTCCACAGAAAGGCTTTCTCTTCAAAACTCCGGAGACTTCTGTCCCTTAAACACCTGCCTGACATATACCCTGATGTCCTCAACCTCCTCTACTATGCCAATGTCTGCAAGTTCCTCGATTCCACTGCTACAGATGGTGTCCAAAAAACGCCCAGGTACCTTCTTATTCCTTTGTCCCCCAAAACTCCTGAAATCACAAATAAATCTTGCTGACAGTCATA

Function

symbol description
si:dkey-73n10.1 Orthologous to human C15orf39 (chromosome 15 open reading frame 39).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9311 Orthologous to human C15orf39 (chromosome 15 open reading frame 39).

Ensembl:

ensembl_id ENSDARG00000069168

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026418 False 4362 mRNA 0.46 4 18931484 18942098
TCONS_00026419 True 491 mRNA 0.49 2 18935081 18937485

Neighbor

gene id symbol gene type direction distance location
XLOC_013366 NA coding downstream 52760 18876390 ~ 18878724 (-)
XLOC_013365 arl2bp coding downstream 56176 18870625 ~ 18875308 (-)
XLOC_013364 tgm2l coding downstream 81182 18803539 ~ 18850302 (-)
XLOC_013363 NA coding downstream 138219 18787384 ~ 18793265 (-)
XLOC_013362 NA coding downstream 182079 18744462 ~ 18749405 (-)
XLOC_013368 ppcdc coding upstream 33441 18975539 ~ 18979520 (-)
XLOC_013369 ints14 coding upstream 53149 18995247 ~ 19006634 (-)
XLOC_013370 dennd4a coding upstream 102741 19044839 ~ 19103929 (-)
XLOC_013371 BX908395.1 coding upstream 167949 19110047 ~ 19111916 (-)
XLOC_013372 megf11 coding upstream 201339 19143437 ~ 19405616 (-)
XLOC_013384 BX323829.1 misc upstream 600004 19542102 ~ 19542231 (-)
XLOC_013361 NA non-coding downstream 204452 18713973 ~ 18727032 (-)
XLOC_013360 BX649641.5 non-coding downstream 229720 18696207 ~ 18701764 (-)
XLOC_013373 CR788229.1 non-coding upstream 432741 19374839 ~ 19374955 (-)
XLOC_013374 CT863714.6 non-coding upstream 480913 19423011 ~ 19423128 (-)
XLOC_013376 CT863714.5 non-coding upstream 509484 19451582 ~ 19451651 (-)
XLOC_013377 CT863714.4 non-coding upstream 509772 19451870 ~ 19451937 (-)

Expression


Co-expression Network