XLOC_013368 (ppcdc)


Basic Information

Item Value
gene id XLOC_013368
gene name ppcdc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18975539 ~ 18979520 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026420
GACGGTTAATAACGTGCACCGCTTCTTAACGCGCAGTAAATGTGTAATATAAATGTCCAAAATGTCTTATCCGAGAAACAGTTTACATATTGacaatacattatataaataatagttATCTTATATGAGGAAACTTTGTTCGGGTAGTTCACTCAGTCTAAAGTTAAAGCATTATACTTTAACAAGTATATTAAATAGTGTGTTTATAATGCAGCAGAACTCTGAATCTGATCATTTACAAACAGACTTGCAAAAGACTGGTTCAAGATTTCATGTTCTGGTAGGTTTGACCGGCAGTGTCGCTGCACTCAAGGCGCCTTTGTTGGTTAAACAACTTCTTGAGATTCCTGAGGTTGATGTGCGTGTGGTCACCACAGACCATGCCACTCATTTTTACGATATCAATGAAGTCCCTGTTCGTGTGTACACAGATAAGGATGAGTGGGAGATGTGGACAAAGCGCTCTGACCCAGTTCTTCACATTGAATTAAGACGTTGGGCAGATCTTTTAGTGATCGCTCCACTAGATGCCAACACACTTGGCAAAATCGCTAGTGGTATATGTGACAACCTCCTGACGTGTGTGGTGCGGGCCTGGGACATCAGCCGCCCTTTGCTCTTCTGTCCTGCTATGAACACAGCCATGTGGCAGCATCCAATTACTGCTCAGCAAGTGTCCACAATTAAAGCATTTGGCTACGCTGAGATACCATGCATTGCCAAAAAACTCGTCTGTGGAGATGAAGGTAAAGGTGCCATGGCTGAGGTCTCAACTATTGTTGATACTGTGAAACAATACGTCCAAAGTCATCCCAAGTAAACTCAGACTAAACCTACTCATCATCGATGAGGAGACACAAGGTTATCTAAAcaataaaatctatattttaaaccAAATTTACAAACagactattttaaatatatttgacatTGTAATAGATATCTGAGTGTTTTGcagatattactattattataatgattCAGAGTAagcactttatttttttcatgacagaagaaaaacactaataataaagcaagtcaacaatagtaaatatgaAGAATAGAACAAATAAGTATGGAATACCAATATACAAACTGACAATTGAATGTACATGTATATTGCAACATAATAGGATATATTTCAGTATGATtattaatacagttttttttttctttgtgagtCAGAACAACTTCAGTCTAAAAgttgctgggttgttgtaacccaaaaatctaattcaaatattatttgtcacatacacagtatgatatgcagtgaaatgcttacacaaccacttgtaaccttaaaaaaaaaataataacaataagaatcTAAATTATGATGAAATAGAAGTTATGCAattgaaaataaatgcaaatataaactATTTAAAGACTTAAATTACAGACAGAAACATAGACGAAACATAGACAGGAAGGAGTGTTTTCTATAGATGGGGCAAAAAGAGACATACTCAACCATTGGGGTTAATATTAATAAGTATAtacgtttaataaaaaaaattacccaATTTTTGGTTTCTTCATATTTGACCCAGGATTGGGTCACAACCACCCAGCATTTACTCGCTACTCAGGCACATGAAAATAGATTTCTAATCTAATTCATGAATAATCTAATTCATGAATAGTCTATGCCTTAACTCATTGTtatttcataataaagtaatatttaattCAGTCCATCGCTATTCATGGCTTGTAAGCTCTGCTTTTTCAACAATATCCATGCTCATAAATAAGCTTGACTACAAACATGTTTATTACTCTTAAACTCCATTGCTGATACAACACTGTTAAACCATATTACTGACATAACTTTGTTAAACCACATTAAGTGGAAGTTAAATAAACCCTGTTTCACAAAG

Function

symbol description
ppcdc Predicted to enable FMN binding activity and phosphopantothenoylcysteine decarboxylase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be part of phosphopantothenoylcysteine decarboxylase complex. Orthologous to human PPCDC (phosphopantothenoylcysteine decarboxylase).

GO:

id name namespace
GO:0015937 coenzyme A biosynthetic process biological_process
GO:0071513 phosphopantothenoylcysteine decarboxylase complex cellular_component
GO:0010181 FMN binding molecular_function
GO:0004633 phosphopantothenoylcysteine decarboxylase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00770 Pantothenate and CoA biosynthesis

ZFIN:

id description
ZDB-GENE-040426-1749 Predicted to enable FMN binding activity and phosphopantothenoylcysteine decarboxylase activity. Predicted to be involved in coenzyme A biosynthetic process. Predicted to be part of phosphopantothenoylcysteine decarboxylase complex. Orthologous to human PPCDC (phosphopantothenoylcysteine decarboxylase).

Ensembl:

ensembl_id ENSDARG00000033020

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026420 True 1886 mRNA 0.34 5 18975539 18979520

Neighbor

gene id symbol gene type direction distance location
XLOC_013367 si:dkey-73n10.1 coding downstream 33441 18931484 ~ 18942098 (-)
XLOC_013366 NA coding downstream 96815 18876390 ~ 18878724 (-)
XLOC_013365 arl2bp coding downstream 100231 18870625 ~ 18875308 (-)
XLOC_013364 tgm2l coding downstream 125237 18803539 ~ 18850302 (-)
XLOC_013363 NA coding downstream 182274 18787384 ~ 18793265 (-)
XLOC_013369 ints14 coding upstream 15727 18995247 ~ 19006634 (-)
XLOC_013370 dennd4a coding upstream 65319 19044839 ~ 19103929 (-)
XLOC_013371 BX908395.1 coding upstream 130527 19110047 ~ 19111916 (-)
XLOC_013372 megf11 coding upstream 163917 19143437 ~ 19405616 (-)
XLOC_013373 CR788229.1 coding upstream 395319 19374839 ~ 19374955 (-)
XLOC_013384 BX323829.1 misc upstream 562582 19542102 ~ 19542231 (-)
XLOC_013362 NA non-coding downstream 226134 18744462 ~ 18749405 (-)
XLOC_013361 NA non-coding downstream 248507 18713973 ~ 18727032 (-)
XLOC_013360 BX649641.5 non-coding downstream 273775 18696207 ~ 18701764 (-)
XLOC_013374 CT863714.6 non-coding upstream 443491 19423011 ~ 19423128 (-)
XLOC_013376 CT863714.5 non-coding upstream 472062 19451582 ~ 19451651 (-)
XLOC_013377 CT863714.4 non-coding upstream 472350 19451870 ~ 19451937 (-)

Expression


Co-expression Network