XLOC_013375 (rpl4)


Basic Information

Item Value
gene id XLOC_013375
gene name rpl4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19451070 ~ 19456269 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026435
GCAGACTTGGGCGGAAGTGACATATGTCGGATGGATCTGCAAGTGCCGGTGGAGTGCTTCATTCTTCCTTTTCTTCCGTGGCCGCCATCGAGTTAGGAGCGTGGTTCCTGGCGAGCCGTGAAAACTTACAATAATGGCTTGTGCCCGACCGTTAATCTCGGTCTACTCCGAGAAAGGGGAGACATCTGGAAAAAATGTGGTTATGCCAGCAGTGTTCAGGGCTCCCATCCGCCCTGATATTGTGAACTTTGTGCACACCAACATGCGCAAGAACAAGCGCCAGCCCTATGCTGTCAGCGaactggccgGTCACCAGACCAGCGCTGAGTCCTGGGGCACAGGAAGAGCTGTTGCCCGTATCCCCCGTGTGCGTGGTGGTGGTACTCATCGCTCCGGCCAGGGTGCTTTCGGAAATATGTGTCGTGGTGGACGCATGTTTGCTCCCACAAAGACCTGGCGTCGTTGGCACCGCAGGGTCAATGTTAACCAGAAGCGTTATGCCATGTGCTCTGCCCTGGCTGCTTCTGCTCTGCCATCCCTTGTCATGGCCAAAGGTCACCGCATTGAGGAGATTCCTGAGGTCCCACTTGTTGTTGATGATAAAGTTGAAGGATACAAGAAGACCAAGGAAGCCGTGCTTCTGTTGAAGAAGCTAAAGGCATGGAACGACATTAAAAAGGTTTATGCCTCTCAGCGTATGCGTGCCGGTAAGGGTAAGATGAGGAACCGAAGGCGTATCCAGCGTAAGGGACCATGCATCATCTATAACGAAGACAACGGAGTGACACGAGCTTTCAGAAATATCCCTGGCATCACACTGCAGTCCGTAAGCAGACTGGACCTGTTGAAACTCGCTCCAGGTGGTCACATTGGACGTTTCTGCATTTGGACAGAGGGTGCTTTCCGCAAACTGGATGACCTCTACGGCACTTGGCGCAAAGCTTCCACCCTTAAAGTGGACTACAACCTGCCCATGCACAAAATGAGCATCACAGATCTGAACAGAATCATCAAGAGTGAGGAGGTCCAGAAGGCCATTCGTCCTGCAAACCGCAAGATTAATCGCAGAGTGTTTAAGAAGAATCCTCTGAAGAACCTCAGAGTGATGATGAAGCTCAACCCATACGCCAAGACAGCCCGTCGCCGTGCTATCATGGCACACAACCCTGATGTCAAGGCCAAGATGCTGAAACCCAAGAAGAAGAGGGTTGTGAAGAAGACCAAGGCTAAGAAGGCTGAAGCTACTCCAGCTCAAGCTTAGAGCTCATAAACAAGACTATGGAGTGCACAcatgattttcaaaataaaacaactgatgaaaattaataaaatctgtCCATTTTAATTCACTGCATACAATATAAGCATTGCCACGTTCCATTGGTTGCCATCTGTTAAATAAATCCTATCATAGTATACACA
>TCONS_00026439
ctatgtgtgatttgattgcaCAGGAATCGCAGgaatgatttttctaatccccataggcaggaaataataaagtagtgactgcatgGTGAAGAAGTACCAATTCTGTACTAAAAAtctactcaagggaaagtaaaagtacacatttttaaaattacttgctaaattacaattcctgaggaacTGATCAATAATAGTaatttgtgtttgtgtaatttattactttacacCACAGATCTCTTACAGTCACTTGTTCTAGTTTTGTGTGCACCCTTGCTGCTTGTTTTGATAATATGCTGTACATAAAAGCTCAAATCATTTTAGACTTCATATTTTTCTTAGTATTGTCAAGTTATAAGATGAAAATGCTTAACACCAGCTGTAAACAGGGCATGTGATAGCAACAGCTTTAAGGCATTTGACCAAATATTGAATGTTGTTTTTCCATGGTGTGGTGAAACAGATTAGAACAGCTCTGAGAAGTTGCATTGATACCATGCAGATATCTCTGATAATGCATTTAAAGCAgttcattaaatttaaaatgaataattgcaCCAAACTTTTCTGCTGTATACTTGTGTTGGTGTGAACAGGCATTAGTTGTAAAATGTTAAGCCTTAACTCCACTGTAGATGTGTCGTGGTGGACGCATGTTTGCTCCCACAAAGACCTGGCGTCGTTGGCACCGCAGGGTCAATGTTAACCAGAAGCGTTATGCCATGTGCTCTGCCCTGGCTGCTTCTGCTCTGCCATCCCTTGTCATGGCCAAAGGTCACCGCATTGAGGAGATTCCTGAGGTCCCACTTGTTGTTGATGATAAAGTTGAAGGAT
>TCONS_00026441
TTTCTTCCGTGGCCGCCATCGAGTTAGGAGCGTGGTTCCTGGCGAGCCGTGAAAACTTACAATAATGGCTTGTGCCCGACCGTTAATCTCGGTCTACTCCGAGAAAGGGGAGACATCTGGAAAAAATGTGGTTATGCCAGCAGTGTTCAGGGCTCCCATCCGCCCTGATATTGTGAACTTTGTGCACACCAACATGCGCAAGAACAAGCGCCAGCCCTATGCTGTCAGCGaactggccgGTCACCAGACCAGCGCTGAGTCCTGGGGCACAGGAAGAGCTGTTGCCCGTATCCCCCGTGTGCGTGGTGGTGGTACTCATCGCTCCGGCCAGGGTGCTTTCGGAAATGTATCCTCAAATAACTAAATTTGACTTGAGCAACACTTGCTGTGATGGTGTAATTTGCGTCCTACTCTACGCACAGCGACAGTTGCCTGCTGTCTTATGCTGGTGTGGAAGGTTGACGATCATTGAGTCTGAGCAGGTTAATGTATGGATGCGTCTTTGAAGTTTTCAAGGCCTGTGCTCACACCAACACAAAAAttctattagattttttttttgagaggatATGAATTGCAGCAGATATAGTTTCAACTGTTACTAGTTTGTTTACAGTTGCATTCACTTTAATACAAACAATTctgcttttttttctcttgttgCATACTTGTAGACAACTCAGTCAAAtagtgtacaatttttttttttttttccttcccaaAAAATGGCATTTAGATATTTGTATTACCTGTGGTGTTTATTAAAGAACTCAGTCAAGCGCTGATTCTGGATAAGTGGTTTGCTGAAATGCA
>TCONS_00026442
TGCTGTGATGGTGTAATTTGCGTCCTACTCTACGCACAGCGACAGTTGCCTGCTGTCTTATGCTGGTGTGGAAGGTTGACGATCATTGAGTCTGAGCA

Function

symbol description
rpl4 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in digestive system; endodermal cell; and eye. Orthologous to human RPL4 (ribosomal protein L4).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-9034 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in digestive system; endodermal cell; and eye. Orthologous to human RPL4 (ribosomal protein L4).

Ensembl:

ensembl_id ENSDARG00000041182 ENSDARG00000110758

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026435 False 1422 mRNA 0.50 10 19451070 19456269
TCONS_00026439 False 831 lncRNA 0.38 2 19452614 19453739
TCONS_00026441 False 813 lncRNA 0.45 3 19454154 19456200
TCONS_00026442 True 98 snoRNA 0.50 1 19454486 19454583

Neighbor

gene id symbol gene type direction distance location
XLOC_013374 CT863714.6 coding downstream 27942 19423011 ~ 19423128 (-)
XLOC_013372 megf11 coding downstream 45454 19143437 ~ 19405616 (-)
XLOC_013373 CR788229.1 coding downstream 76115 19374839 ~ 19374955 (-)
XLOC_013371 BX908395.1 coding downstream 339154 19110047 ~ 19111916 (-)
XLOC_013370 dennd4a coding downstream 347141 19044839 ~ 19103929 (-)
XLOC_013382 lctlb coding upstream 7156 19463425 ~ 19484919 (-)
XLOC_013383 snapc5 coding upstream 31433 19487702 ~ 19491162 (-)
XLOC_013385 aagab coding upstream 356339 19812608 ~ 19819812 (-)
XLOC_013386 NA coding upstream 427322 19883591 ~ 19884294 (-)
XLOC_013387 NA coding upstream 683803 20140072 ~ 20149097 (-)
XLOC_013384 BX323829.1 misc upstream 85833 19542102 ~ 19542231 (-)
XLOC_013366 NA non-coding downstream 572346 18876390 ~ 18878724 (-)
XLOC_013363 NA non-coding downstream 657805 18787384 ~ 18793265 (-)
XLOC_013388 NA non-coding upstream 829396 20285665 ~ 20319873 (-)
XLOC_013395 BX470130.1 non-coding upstream 1177520 20633789 ~ 20633923 (-)
XLOC_013398 BX470160.1 non-coding upstream 1389921 20846190 ~ 20846313 (-)

Expression


Co-expression Network