XLOC_013383 (snapc5)


Basic Information

Item Value
gene id XLOC_013383
gene name snapc5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19487702 ~ 19491162 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026447
TACTTTGTGCGCATGCGTGCTTGAGTGCGCGTGACTTGGTTCTTCAGAATGCTACAACTGTGGagttaaatagaaaacaaataaacactttAATCGGAATCATGCACGTTCCGCAGAGCGTGTCGAACCAATAAATAATGCTGTAGAAACGCTTGTCCACTATGTTGAGTCGACTTCAGGAACTCAAGAAGGAAGAGGAGACTCTTCTGAAGATAAAAGTCATGCTGCAAGATCAGCTTAACAGACTAAAGTTTGAGGAAGGGACACTGAAGTCAATGATTAATGCTCAGACTGAAGAAGATCCAAGTGAAGCTCCTGCCCCTGAGGAGGAAGTAAACCTAGATGACGAGACCGAGATCAACCAAACCAAACTAGTATTAGGTGCTCAAACAGACTATGACATGGAAgaagatgaagaggaggaggaagaggaagatgatgacgatgatgcTGATGAAGATCTCAACATGGTGCTAGAAGACGAGGAGGAAGACGATGATGACTACTGACTGAGccgaggaggaaaaaaaaaacgagtgTTTTCATGTACTCCTGTGATTTAGCTGTGTAATCTGCACATTTGGCATGCTGAAAGAGACTAGTACTGTCTTAGATTGGTGTTGATTAGACAAACTGTTGGTTCACACATCTCTAAAATCCTCCACAAGTATGTGTAGCACAAATACAACTTCTCCTATTACTGTGCTGTTAGCCAAGCCTGCACTTTACGTATTTTTAAAAAACCGAAATTGCACCAAACCTGTTTTGTAGTGTTTACCAAGCGATGCTGTATCATGTGggctttatttaatattgtgcTGTATTGCTTT

Function

symbol description
snapc5 Predicted to act upstream of or within transcription by RNA polymerase II and transcription initiation from RNA polymerase III promoter. Predicted to be located in nucleus. Orthologous to human SNAPC5 (small nuclear RNA activating complex polypeptide 5).

GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process
GO:0006384 transcription initiation from RNA polymerase III promoter biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-041111-50 Predicted to act upstream of or within transcription by RNA polymerase II and transcription initiation from RNA polymerase III promoter. Predicted to be located in nucleus. Orthologous to human SNAPC5 (small nuclear RNA activating complex polypeptide 5).

Ensembl:

ensembl_id ENSDARG00000062476

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026447 True 830 mRNA 0.42 4 19487702 19491162

Neighbor

gene id symbol gene type direction distance location
XLOC_013382 lctlb coding downstream 2783 19463425 ~ 19484919 (-)
XLOC_013375 rpl4 coding downstream 31433 19451070 ~ 19456269 (-)
XLOC_013381 CT863714.7 coding downstream 32461 19455144 ~ 19455241 (-)
XLOC_013380 NA coding downstream 32835 19454800 ~ 19454867 (-)
XLOC_013379 CT863714.2 coding downstream 34821 19452751 ~ 19452881 (-)
XLOC_013385 aagab coding upstream 321446 19812608 ~ 19819812 (-)
XLOC_013386 NA coding upstream 392429 19883591 ~ 19884294 (-)
XLOC_013387 NA coding upstream 648910 20140072 ~ 20149097 (-)
XLOC_013388 NA coding upstream 794503 20285665 ~ 20319873 (-)
XLOC_013389 kif23 coding upstream 944659 20435821 ~ 20458840 (-)
XLOC_013384 BX323829.1 misc upstream 50940 19542102 ~ 19542231 (-)
XLOC_013378 NA non-coding downstream 35424 19452210 ~ 19452278 (-)
XLOC_013377 CT863714.4 non-coding downstream 35765 19451870 ~ 19451937 (-)
XLOC_013395 BX470130.1 non-coding upstream 1142627 20633789 ~ 20633923 (-)
XLOC_013398 BX470160.1 non-coding upstream 1355028 20846190 ~ 20846313 (-)

Expression


Co-expression Network