XLOC_013385 (aagab)


Basic Information

Item Value
gene id XLOC_013385
gene name aagab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19812608 ~ 19819812 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026449
AGACGCGGAAGCAAGTTGAGGTTAGAGGTGAAAGGTTTCCTTCAGGAGGTTGACAGCTGTTGCTAACGTGCTACCTTCATTGGGAGCTATTTTGAATTGTTCCAAGGCTTAAAATGGCAGATGATCAAGGAGATGAAGCACCTACCCTACCTTGTATCTTAGTCACAAGTTGTGATTCCAACTTTAAAGAAGAGGAGCTCATTAGACAGATTTTGAGCTCAGAATCACCACCGCAGCCTAACAGAATAGAAGAAAGAGTTTCCTGGTATCCATGGACGATCAACAACAAATACTACACCGCAAACGTCAGCCTATGTGTCGTATCAAGTACATTCGACATGAATGCTGAGGTGGCCCGGTCTATGCAAGCGTTCATCATTTATTTTGACAGCAAAACTAAAGACAGCCTTAACAATGTCAACTCCTGGTTATCAGTAGTGGAGGAACTGGCTCCAGAAGTGCTGATCCTAGTGTGTGACCATGTGTGCGACAGcgatgaggGTGTTAGCAGACAAGATGCCCAGCAATGGTGTTTGGCCCATGCGTTTGAATTAGTAGAACTTAACCCACAAGATCTACCCGATGAAGATgATGACTTTCCAGAGTCCACTGGGGTAAAAAGAATCATCCAGGCCCTCAATGCCAACGTGTGGTCCAGCGTTGAGATGAAAGATGAACACAGTCAGGGTTTCGGGCTAATGAGCAGTCTGGTGGCTTCCCGTCACAACAACCCACGGCCCAGTCAAGAAACACTGtCCTCTCATTCCCCATCCAACAGTACAGATGAAGGCACTGAGAGCCAGAGGGCAGAGAATAACCAGAGTAATACAGTAGATACAGCAGTCGATCCCATGATTGACATAGACATTCAGGAGCTGGCTAATCTTACAGCTGGAGACCCAGATGTGGAGAATTTTGAACGACTCTTTACAAAGTTGAAAGAAATGAAAGataaGGCCTCTTCATTGCCACATGAACAGAGGAAAGTACATGCAGAAAAGGTTGCTAAAGCGTTTTGGATGGCTATTGGTGGAGACCAGGATGAGATTGATGGTTTGTCATCAGGGGAAGAGAGTTAAAGACCAGTGACTTTTAACCAGCCTCCACTGTTGATACTCAGCCCACCTTTTGGACCCTCAATCACCCCAAATCCGCCCAGTCCAGAGCTAAGATCCAGTAATGAGGAACACGCAAGAATATGGACAACAGCAGCATCATACTGCTTTTACTACTGTATTTTCTCAACACCCCAATCAGGCAGTAGAAATCAGTATTGACTTTTGGCTTTCAATATTATAAATTCGGAGCCGCTCGACAGGTTGCAGGGTGCAAGATTGTGGTCTTATCCACTTTCTTGCGGTTTTAGTGTAAGTATGCAGCAACAAACAATACTAGGAGGAAGCCTATGGTTCTGTCAAGAGTTGTTGTAAATCAAATGACAGATGGGCTGACAAATGGATcatttttcaacttttattttcATGATGTGACTCACAATTATGGACTATGTTCGAGCATGTCATTAGCTGTTCATCAATTAAAAAGAATGATCTGTAGAATCA

Function

symbol description
aagab Predicted to enable GTP binding activity and GTPase activity. Human ortholog(s) of this gene implicated in punctate palmoplantar keratoderma type I. Orthologous to human AAGAB (alpha and gamma adaptin binding protein).

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040718-120 Predicted to enable GTP binding activity and GTPase activity. Human ortholog(s) of this gene implicated in punctate palmoplantar keratoderma type I. Orthologous to human AAGAB (alpha and gamma adaptin binding protein).

Ensembl:

ensembl_id ENSDARG00000041170

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026449 True 1562 mRNA 0.44 10 19812608 19819812

Neighbor

gene id symbol gene type direction distance location
XLOC_013383 snapc5 coding downstream 321446 19487702 ~ 19491162 (-)
XLOC_013382 lctlb coding downstream 327689 19463425 ~ 19484919 (-)
XLOC_013381 CT863714.7 coding downstream 357367 19455144 ~ 19455241 (-)
XLOC_013380 NA coding downstream 357741 19454800 ~ 19454867 (-)
XLOC_013379 CT863714.2 coding downstream 359727 19452751 ~ 19452881 (-)
XLOC_013386 NA coding upstream 63779 19883591 ~ 19884294 (-)
XLOC_013387 NA coding upstream 320260 20140072 ~ 20149097 (-)
XLOC_013388 NA coding upstream 465853 20285665 ~ 20319873 (-)
XLOC_013389 kif23 coding upstream 616009 20435821 ~ 20458840 (-)
XLOC_013390 paqr5a coding upstream 640076 20459888 ~ 20466061 (-)
XLOC_013384 BX323829.1 misc downstream 270377 19542102 ~ 19542231 (-)
XLOC_013378 NA non-coding downstream 360330 19452210 ~ 19452278 (-)
XLOC_013377 CT863714.4 non-coding downstream 360671 19451870 ~ 19451937 (-)
XLOC_013395 BX470130.1 non-coding upstream 813977 20633789 ~ 20633923 (-)
XLOC_013398 BX470160.1 non-coding upstream 1026378 20846190 ~ 20846313 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_04344339_04347938 AAGAB coding CI01000013 null 4344339 ~ 4348083 (+)