XLOC_013386


Basic Information

Item Value
gene id XLOC_013386
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19883591 ~ 19884294 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027293
atccgcccctgctaATAATGCTGATAATGATATCATATTTTCAACAAATTCATTAACTTCAaaacataagaaaataaataaaactggggGAAATGTCCAATTCAGGCCTCTCACAGTCATTGATAAATCATCTGTTTGGTTCTTTGATCTAACTAAATATTTGAGATTACTGTAAAAATTGTGCGTTGCAAATTTCAAGAGGAATTCTCTATTTTTGAATCTGTAGATCTGAATGTTGCCTTTTACAAATGGATAAACATAGTTTTGTGTTAAATAGAAGAGGAAACCATAAAGTtcagaattaattaatttCCTCCGCCTCCTTGTAAGCAAAGTAAACAGTAACAGGTCCTGCAGAGGTCTGAACCGTCTCTGTCACGCCAACCACCATCCATGAGCCCAATCCATACGCCAAGCATGGAATAccttaaaaaagagagagaaaatcaTAATACAAATACATCTGCTGTACTGTCAGAAACAGAAGGTCTCTAAACAATATCCGAACTGACCTAAATTGATGACTTTCAGAGCTCCGAAAAACGTATTCTCAAACTGCAGGTTCTGTGGAGGTGCTTTGGTGCAGTGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027293 True 589 lncRNA 0.37 2 19883591 19884294

Neighbor

gene id symbol gene type direction distance location
XLOC_013385 aagab coding downstream 63779 19812608 ~ 19819812 (-)
XLOC_013383 snapc5 coding downstream 392429 19487702 ~ 19491162 (-)
XLOC_013382 lctlb coding downstream 398672 19463425 ~ 19484919 (-)
XLOC_013381 CT863714.7 coding downstream 428350 19455144 ~ 19455241 (-)
XLOC_013380 NA coding downstream 428724 19454800 ~ 19454867 (-)
XLOC_013387 NA coding upstream 255778 20140072 ~ 20149097 (-)
XLOC_013388 NA coding upstream 401371 20285665 ~ 20319873 (-)
XLOC_013389 kif23 coding upstream 551527 20435821 ~ 20458840 (-)
XLOC_013390 paqr5a coding upstream 575594 20459888 ~ 20466061 (-)
XLOC_013391 ighmbp2 coding upstream 632233 20516527 ~ 20532339 (-)
XLOC_013384 BX323829.1 misc downstream 341360 19542102 ~ 19542231 (-)
XLOC_013379 CT863714.2 non-coding downstream 430710 19452751 ~ 19452881 (-)
XLOC_013378 NA non-coding downstream 431313 19452210 ~ 19452278 (-)
XLOC_013377 CT863714.4 non-coding downstream 431654 19451870 ~ 19451937 (-)
XLOC_013395 BX470130.1 non-coding upstream 749495 20633789 ~ 20633923 (-)
XLOC_013398 BX470160.1 non-coding upstream 961896 20846190 ~ 20846313 (-)
XLOC_013411 BX548157.1 non-coding upstream 1828002 21712296 ~ 21720051 (-)
XLOC_013375 rpl4 coding downstream 427322 19451070 ~ 19456269 (-)

Expression


Co-expression Network