G475364


Basic Information

Item Value
gene id G475364
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000330
NCBI id null
chromosome length 4651236
location 3350279 ~ 3351189 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU545455
TTTATAATTATGACCTTTACCTTTTTAAATAATTTGCTCACACTTTGAATATCAGGTAGGCTATTGTTTAATTTAATTCAATAGCACTTTTCACAATTTTGCATGGTTGCAAACAGATATACATACATATAGAAAGTAGTTACATAAGTAAATATTTGTAATTATGACAAATAAAGAAAACAACATATAGTCAGTTTGAATTGGTGAAAGAAATTCACGTACCTGATCAGAAGTGAAACACAAGCAGTTCTGCATGTTCACATTTTTCCACCAATGAACGGAACTGTCTGTGTTTTAGTGCGTGCACAAGAATAAAACTTATGTGCCGGTTTATGCAATTGCTTCATGTTGCGTTAATGACAGATAATGTCAGGTAAAGTGGAAGCAAAACATTCTTGATATTTAATGTTACATCTAATGGTTTTATTTCTTAAACAGTTTAAAGTTTAATGCACGTTCGTGTTGTATAGCAACAGGCCGTTTCACATTTATTTTCACGCACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU545455 True 503 lncRNA 0.32 2 3350279 3351189

Neighbor

gene id symbol gene type direction distance location
CI01000330_03316303_03332582 BNIP2 coding upstream 17697 3315549 ~ 3332582 (+)
CI01000330_03273418_03280036 NA coding upstream 70058 3273322 ~ 3280221 (+)
CI01000330_03172826_03180813 ANX2A, ANXA2, ANXA2A coding upstream 169333 3172826 ~ 3180946 (+)
CI01000330_03149640_03168640 NA coding upstream 181455 3149640 ~ 3168824 (+)
CI01000330_03111967_03139685 RORAA, RORA coding upstream 210535 3111236 ~ 3139744 (+)
CI01000330_03495676_03498512 NA coding downstream 143717 3494906 ~ 3499215 (+)
CI01000330_03505183_03536773 OTUD7A coding downstream 152116 3503305 ~ 3537059 (+)
CI01000330_03620261_03633818 TRPM1B, TRPM1, TRPM1A coding downstream 269072 3620261 ~ 3635348 (+)
CI01000330_03670667_03672729 NA coding downstream 319278 3670467 ~ 3673129 (+)
CI01000330_03692275_03699509 ACSBG1 coding downstream 340796 3691985 ~ 3699529 (+)
G475312 NA non-coding upstream 95260 3254534 ~ 3255019 (+)
G475311 NA non-coding upstream 96357 3249642 ~ 3253922 (+)
G475291 NA non-coding upstream 158136 3191711 ~ 3192143 (+)
G475290 NA non-coding upstream 161203 3188838 ~ 3189076 (+)
G475289 NA non-coding upstream 161613 3188270 ~ 3188666 (+)
G475217 NA non-coding downstream 42848 3394037 ~ 3422337 (+)
G475374 NA non-coding downstream 93729 3444918 ~ 3445353 (+)
G475230 NA non-coding downstream 187352 3538541 ~ 3545531 (+)
G475402 NA non-coding downstream 255804 3606993 ~ 3607198 (+)
G475235 NA other upstream 259046 3072547 ~ 3091233 (+)
G474819 NA other upstream 673837 2675912 ~ 2676442 (+)
G474807 NA other upstream 752174 2595046 ~ 2598105 (+)
CI01000330_02590806_02597446 NA other upstream 753132 2590091 ~ 2597586 (+)
G474777 NA other upstream 835515 2511456 ~ 2514764 (+)
G475236 NA other downstream 234286 3585475 ~ 3590497 (+)
G475421 NA other downstream 365355 3716544 ~ 3717419 (+)
G475483 NA other downstream 641837 3993026 ~ 3993938 (+)

Expression


Co-expression Network