XLOC_013388


Basic Information

Item Value
gene id XLOC_013388
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20285665 ~ 20319873 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027295
TAACAATACTGTCTCAATCATTCTCCTCAGTTGGTTGAAGGTTACCAGGGGCAAGAGGGGTAACAAATGGACCGGGCGCAACGTCTGAGAGATAGCAGTCTGAAGGCCAGATAATAGGCTGTCATAATGGACAATACAGAGAGAAAAAGCTCCAGAGATCAGCCGAACCCGAAGAACAAaTGCACTGAATAAACAAGGCTGTATCCCTGGCCCAGAAATGCTTCAAAGACTGCAAAGTCTGTTGGGAATGCTTCAGAAATGTAGAGCAGTGTTGACTGCTTAGCTTTGCATTTCAACAAAGCTCCCGGTTCTGAGCCCCATGCAGATCTCTCGTCGAGCATACAGGCCCATGTAACCAAGCAGAGCTCTAAGAGGATgagctccctctctctctttctctggcgCACACATACACAGCACTGCAATATATTAATGTATGCTTTCTTATGTGCCTATTCCCAGAATCACTCATACAAACTTGATgctctttttttttgcttttctgccCTCTTATTTTCTCACTGTGCTCCAGGACTCCTCTTTAAGGCTTCTCCTGATTCACAAGCGTCAATGTTTAGGGAGTTGTTTACACTACAGTTCGAATAATGATGAAATCATAAAAAAGTTTGAAACACTGAAACATTTGATTTGAAATGAATTGTTTTTCATCATCTGCTCGCCTATGTTGTTTGACACTTGGTGCGGCACTTCTCTGTAGGACACTGAAAATATAGGCAATACTTTCGATTAAGGGACACATATTAGCACGGGCATTCTGTGGCTCTATTTGTAAAGCACAATTTAATGCCTAGTTCTGGATAACCATATTCTAGTTTGCATAAAGGCATAGGTCACCCAAATATCAAATGTGTTGTTAATTTACACACCTTCTG
>TCONS_00026961
CAACGTCTGAGAGATAGCAGTCTGAAGGCCAGATAATAGGCTGTCATAATGGACAATACAGAGAGAAAAAGCTCCAGAGATCAGCCGAACCCGAAGAACAAtgCTTCATCAGCTCGTCTCTGTGGCATTCAGGACTGTGTCTGTGCATTCATATCTATTGATGTGCCAGTCTGATGATGGACAAGGACGGAGGAAGGATTTGTTAACCTTGCTCTTCGGGACATGCCAATTACGCTCCAGCAGAGCCCCTTAATGAAGTCGATGGGATATCAATCTGTTTACAAACGCCTGGCCAACAGTGAGAGTGAACCGCAATGAGCTTTTAAATCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027295 False 893 lncRNA 0.42 2 20285665 20319873
TCONS_00026961 True 331 lncRNA 0.47 2 20305484 20319795

Neighbor

gene id symbol gene type direction distance location
XLOC_013387 NA coding downstream 136568 20140072 ~ 20149097 (-)
XLOC_013386 NA coding downstream 401371 19883591 ~ 19884294 (-)
XLOC_013385 aagab coding downstream 465853 19812608 ~ 19819812 (-)
XLOC_013383 snapc5 coding downstream 794503 19487702 ~ 19491162 (-)
XLOC_013382 lctlb coding downstream 800746 19463425 ~ 19484919 (-)
XLOC_013389 kif23 coding upstream 115948 20435821 ~ 20458840 (-)
XLOC_013390 paqr5a coding upstream 140015 20459888 ~ 20466061 (-)
XLOC_013391 ighmbp2 coding upstream 196654 20516527 ~ 20532339 (-)
XLOC_013392 dennd11 coding upstream 221443 20541316 ~ 20560059 (-)
XLOC_013393 bcl2l13 coding upstream 261812 20581685 ~ 20608300 (-)
XLOC_013384 BX323829.1 misc downstream 743434 19542102 ~ 19542231 (-)
XLOC_013381 CT863714.7 non-coding downstream 830424 19455144 ~ 19455241 (-)
XLOC_013380 NA non-coding downstream 830798 19454800 ~ 19454867 (-)
XLOC_013379 CT863714.2 non-coding downstream 832784 19452751 ~ 19452881 (-)
XLOC_013395 BX470130.1 non-coding upstream 313916 20633789 ~ 20633923 (-)
XLOC_013398 BX470160.1 non-coding upstream 526317 20846190 ~ 20846313 (-)
XLOC_013411 BX548157.1 non-coding upstream 1392423 21712296 ~ 21720051 (-)
XLOC_013417 CT573204.2 non-coding upstream 1763899 22083772 ~ 22083886 (-)
XLOC_013420 CR933017.1 non-coding upstream 2230722 22550595 ~ 22552314 (-)

Expression


Co-expression Network