XLOC_013390 (paqr5a)


Basic Information

Item Value
gene id XLOC_013390
gene name paqr5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20459888 ~ 20466061 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026453
GTGTGTCAGGAGGGAAAACTCAAACATTCACTGTAtgttgtttattcagttcacacACACTGAACGCCGAAACCACATCTCCATATGACGGGAGAGGTTTACAGAACCATCCTGATTTGGTGACTGGACTGGGAAATACCATAATTAAGGAGAACACTACTAAAAAGAAGACTTCAAAAGAAACAATCAGGGAGCTCTTTACATGGCAGATTGTCTCTCCTCCTTGTGATTTCTGCGTCTTCTAATATGCTCAATCTCATCAAGCTACCTCAAGTGTTCACCATCAACCAGGTTCCAAAAGTCTTCCATGAAGATGGTATCATCTCAGGGTATCGCCACCCATGCAGCTCTGCCAAAGACTGCGTGCTAAGTCTTTTCCAGCTAACAAATGAAACCCTCAATATTTGGACTCATTTTCTACCTACATGgTTTTTCTTGTGGAAACTGCTGACGGTGGTGCTGGTGCTGGAGGACTGGCGGGATCCTTTCATATGGCCTTTCCTGGTGTTCCTGCTGTCATGCTGTGTGTATCCACTGGCTTCCAGCTGCGCCCACACCTTCAGCACCATGTCTGAACGGGCCAGGCACATCTGCTTCTTTTTTGATTATGGAGCACTCAGCTTCTACAGCCTTGGTTCTGCCATCATCTACTCCTCTTACTCGTTTCCAGATAAATGGGTTAATGGCACATTTCACTTAAACTATGTTTCTATAGCTGTTGTCAACTCTATTATCTCCACTGCTCTTGCCTGCTACTCAAGacttGGTTTACCATTTCTTGAGTATAATTGCCACAGCATTAAAAGGCCTTCTGGGAAATTGGATCAGAAGCTTTGTAAATGTCTCCGGATAATTGCATTTGTTTATCCATATCTCTTCGACAACATCCCCCTCTTTTACAGAATCTTTGTGTGCGCTGGTGAGGGCTGCACTGTTAATGAGGCTAATACAGTTCACTATCAGCACACATCATTGGCTTTCTTTACTGGCTTTCTTTTTGCCACACACCTGCCTGAACGACTGGCTCCTGGCAGTTTTGACTACATAGGTCACAGTCATCAGCTCTTCCACGTGTTCGCTATTATTGGCACATATTTCCAGATGACGGCCATTGAACTTGACATGGCTGCAAGGAAACAGTGGCTTCATGCTCATTTGCCGCCAGTCACCTTTCTAAACACAGTAGGAGCTGCGTTCTTTAGTGTGGTCAGTGGGCTTTGTATAGTATATGTCTTCAGTCTATCGCTTTTCTCCACCAGAGGTGTGAAGAACAAATCATTCTGAAATTTGACATTTGGTTATGTCACTGCACAGGCCAACCAAGTAAGCtccctctgaaaaaaaaaaattatattgtatgTATTATAGCTATGTTAAGTGGCCTGAAAAGATTCTAATCCGGAGgaatataagtctgtaaaatttgtaatttgtgtgtttattattctttttttttgtaaatgttttgtgtttttgtctgcttCAAATCACATTCCTAAAATTTGCACTATTTCAAAGCACATTTCCATGTTCCAAGCACATGAAtcacatttataataatttttatccaagtgcctattttaaataaggCTTTTTGAACACTGTATTTGTGAAGTCTTTGTCTTGTAAAGAAACTGTATTGAGAAGATATgctatttttctaaataaaactttaaagatAA

Function

symbol description
paqr5a Predicted to enable signaling receptor activity. Predicted to act upstream of or within oogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in hindbrain; olfactory placode; ovarian follicle stage IV; and peripheral olfactory organ. Orthologous to human PAQR5 (progestin and adipoQ receptor family member 5).

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0005496 steroid binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-867 Predicted to enable signaling receptor activity. Predicted to act upstream of or within oogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in hindbrain; olfactory placode; ovarian follicle stage IV; and peripheral olfactory organ. Orthologous to human PAQR5 (progestin and adipoQ receptor family member 5).

Ensembl:

ensembl_id ENSDARG00000041145

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026453 True 1682 mRNA 0.41 9 20459888 20466061

Neighbor

gene id symbol gene type direction distance location
XLOC_013389 kif23 coding downstream 1048 20435821 ~ 20458840 (-)
XLOC_013388 NA coding downstream 140015 20285665 ~ 20319873 (-)
XLOC_013387 NA coding downstream 310791 20140072 ~ 20149097 (-)
XLOC_013386 NA coding downstream 575594 19883591 ~ 19884294 (-)
XLOC_013385 aagab coding downstream 640076 19812608 ~ 19819812 (-)
XLOC_013391 ighmbp2 coding upstream 50466 20516527 ~ 20532339 (-)
XLOC_013392 dennd11 coding upstream 75255 20541316 ~ 20560059 (-)
XLOC_013393 bcl2l13 coding upstream 115624 20581685 ~ 20608300 (-)
XLOC_013394 wnt2 coding upstream 147180 20613241 ~ 20636549 (-)
XLOC_013395 BX470130.1 coding upstream 167728 20633789 ~ 20633923 (-)
XLOC_013384 BX323829.1 misc downstream 917657 19542102 ~ 19542231 (-)
XLOC_013381 CT863714.7 non-coding downstream 1004647 19455144 ~ 19455241 (-)
XLOC_013380 NA non-coding downstream 1005021 19454800 ~ 19454867 (-)
XLOC_013398 BX470160.1 non-coding upstream 380129 20846190 ~ 20846313 (-)
XLOC_013411 BX548157.1 non-coding upstream 1246235 21712296 ~ 21720051 (-)
XLOC_013417 CT573204.2 non-coding upstream 1617711 22083772 ~ 22083886 (-)
XLOC_013420 CR933017.1 non-coding upstream 2084534 22550595 ~ 22552314 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_03949848_03950925 NA coding CI01000013 null 3949848 ~ 3951293 (+)