XLOC_013391 (ighmbp2)


Basic Information

Item Value
gene id XLOC_013391
gene name ighmbp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20516527 ~ 20532339 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026454
ACTTCTGTCAgttatcaaatattattattttttcagatCATGATAGTTAAGTTGTAAAGAATCTGGCGAAAAATCTTGGTTACCCGTACCCTGTTTACCCAACTTAACAGCTATGGAGGTTGAAAATTTCGTTTCAAAAACTCTTGAGCTCCTACAAGAAGAGAGAGAAGCTGAACTGGAAGAAACACGCGCATGGCAGGAGAATGTGTCTCTCAAGAATCTACAGCACAAAGGAGTGTGTCTGATGAAACTTCAGATCGGAAGCCAGCACACTGGAATGTATGGCAGACTTCTAGTCATTTTTGAACCCAGGAAATGCATAGGGCTCTCAGTTCTACCCAGCAACACTTTTGGACCTGGTGATATTATAGGCTTGTATCAGGCAGAGGGTCAGGCTCTGCCTACTCAGTTGGGGTCAGGTGTGGTGACTCGTGCTACTCAAGCATCTCTGACGGTGGCTTTTGATGACACACAGGATGGTACTAATTTAGACAGAGATGGACTCTACAACCTAATGAAACTGGCAAATGATGTGACCTACAGGCGGCTGTCAAGTGCACTAAAGTCTTTAAATGGATACAGCAACGGTCCTGCATCTCACCTGATCAGTGTTCTTTTTGGTTACTCTCAACCAGGGATCTTATCACATCTGTATGCATTGGAATTTAACAACACCAAGTTAGATGATTCTCAGAAAGAGGCTGTGTCGTTTGCAATATCTCAAAAAGATGTTGCAATCATACATGGACCACCAGGCACTGGCAAAACTACTACAGTGGTTGAAGTGATCCTGCAGGCagtgaaacaacaacaaaagGTCTTGTGCTGCGCTCCTTCAAATGTGGCTGTTGATAACTTGGTGGAGCGTCtggcgaagaataaggtcaagGTTTTAAGACTGGGTCACCCAGCACGTCTGCTCGAGTCTATTCAGAAACACTCGCTGGATGCGGTCCTTGCACACAGTGACAACACCAACATCATTTCTGATATTCGCAAAGACATGGACAAAGCGTTTAATGAAATTAAGAAGGCACGCGACAAAGGCCAGCGGAGCAATCTGAGACGGGAAATCGGGGAACTGCGGCGAGAGCTGAGGACCAGAGAGGAAACTGCTATCAGTCAGATCCTGAAAAGAGCCGATGTTATTCTAGCAACGAACACTGGAGCCTCTGATGACGGTCCTCTTAAACATCTTCCTAATGATCATTTTGACCTGGTGGTGATAGATGAGTGCGCTCAGGCTCTGGAGAGCAGCTGTTGGATCGCTCTGCTTAAAGCACGCAAATGTATACTGGCTGGGGATTACAAACAGCTGCCGCCCACTATCAAATCACAGAGTGCTGCATCTAAAGGCCTGTCTGTCAGTTTAATGGAGAGGCTGATCAAGAAATATGGAGACTCGGTGGTTCGAATGCTGACCACACAGTACCGTATGAACAGTGCCATCATGCAGTGGGCTTCAGAGCAGATGTATCAGGGAAAACTCATTGCACATCCTTCAGTGGAGAAGCACTTGCTTAGAGACCTGGCAGGTGTTGCGGATGTTGAGGAAACCAGAATTCCTCTTCTGCTCGTTGACACTGCAGGCTGTGGACTGAATGAGATGGAGAACACAGATGAGCAGTCCAAAGGGAATCAAGGAGAAGTGGATATTGTGGCTCTTCATATCAAAGCTCTTACCGAGGCTGGAGTTCAAGTCAAAGACATTGCGATTATTGCTCCCTATAATCTTCAGgtggaTCTTTTGAGGCAGAAACTGTCCCATAAATATGCAGAGCTGGAAATTAAGTCTGTTGATGGCTTCCAGGGCAGAGAGAAGGAGGCAGTGGTGTTGTCATTGGTCAGATCCAACAGGAAGGGTGAGGTTGGCTTTCTTGCTGAAGACCGAAGGATCAATGTGGCTGTGACTCGTGCCAGACGGCAGCTCGTTGTGGTTTGTGATTCTCAAACGGTTCGAAACCACGACTTCCTCAAATCACTAGTGGACTATATGTCTAAGCATGGAGAACTTCGCACCGCCTTTGAGTACCTGGAAGACTGTGTAGCGCAGAATTACACTCGTGATGAAAAGGACAAACAGAACAAAGGTAAAGACACCACATCCGCAAAGCAGAAGACCAAGAAGCAGGACAAGAAGCCAGAGCAGGAACACAAGAAAAGtgcaaacaacaaaaacagtgGAGCCAATCAGTCCGGTGTTCATCATAATAACACCAATTCACACCATCCTAAACCCAAAGATGCAGATCAGACGCAAAGTAAAAGAAAGGAGATCAAGGAGCAACTTTTGAACTTTCTTAAAGATCCAGACAAGACAGAACTAGAGTTTCCTTCCACTTTAAATTCCCATGATCGTCTACTGGTCCATGAGCTCTCTGAAGAAATTGGTTTGAGGCACGAAAGCCAGGGAGAAGGGAAAAGCCGCCACATCACTGTGTCCCGGTCTCCATCAGGACTCGGTAATGAGCCTAAACCTGATAAACCAGATGAAGCCCCATGTACAGTTGCAAATGTACAAGAAGAGTCACCAAATAAACCCTCGCAGCCAACCGTTGATCTGAAAAGCCTACATTTGGAGCGCATGCGACGAGAGCAGGAGAAACGAGAGGagaaaaaacagcaaaaacaacagAGTGCCAGACCGGAACCAAATTTTACTGCTAGTAAAAGCCAGTTCGTTAAGAAACCTAAAGGAACTTCCAAAGGAACTTCAAAGATAAAAGCAGGAGCCACAGATATTGCTGCGGCTGCCAATGGAGATGATGATTTTGATGCTCTCATCAATGCTGTGGTTAAAGCAGAAAGTGTGTGTGGTTTTGTGAAATGCAAAGCCAGTGTGCTGACGCTAGGACAACTCTGCATTTACTGTAACAGACAGTACTGCTTGAGTCACCATATACCCGAGgTTCACGGATGTGGAGACAAGGCAAAATCTCAGGCTAGAATGAGGATAAGCAAAGAAGGAGTGCTCTACGCAGGAAGTGGACAGAAGGACAAATCAGTGGATCCAAACAAAAAAGCATATCTACAGAGAAAACTAGACTCTAAACTCAAAGATATGGTGTCACagagaaaaacaaaagccaaagaCAAAGAAAACTGAAATTCAATGAGACTCTTTTGATGCTTTTTTAATTGAAATGTGCTGGTAATTTACTTGAAAGAAAATGTATACAggaatgtataatgtatatagGAAGATTTCCTCGCTGTAAGTTTAGGTGATTATTTATTACAGATACACACTGGCATGTTGAAATATGGGTTTCAGAATGACTTAAAATACACACTCTAATGCTAGTCTGAATCCCTGCACAAGATTTATGTCTTGCAGAATTGTTGTTGAGAGCTTTGGGGGttgcttttctttctctctcagtTATTGATGCGTTATTATTTATGTCATTTATAATCTTTCTAAAGAAAGCCGGTTAAGCAGAgcctttg

Function

symbol description
ighmbp2 Predicted to enable 5'-3' DNA helicase activity. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2S and distal spinal muscular atrophy 1. Orthologous to human IGHMBP2 (immunoglobulin mu DNA binding protein 2).

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-050419-258 Predicted to enable 5'-3' DNA helicase activity. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2S and distal spinal muscular atrophy 1. Orthologous to human IGHMBP2 (immunoglobulin mu DNA binding protein 2).

Ensembl:

ensembl_id ENSDARG00000069274

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026454 True 3450 mRNA 0.44 15 20516527 20532339

Neighbor

gene id symbol gene type direction distance location
XLOC_013390 paqr5a coding downstream 50466 20459888 ~ 20466061 (-)
XLOC_013389 kif23 coding downstream 57687 20435821 ~ 20458840 (-)
XLOC_013388 NA coding downstream 196654 20285665 ~ 20319873 (-)
XLOC_013387 NA coding downstream 367430 20140072 ~ 20149097 (-)
XLOC_013386 NA coding downstream 632233 19883591 ~ 19884294 (-)
XLOC_013392 dennd11 coding upstream 8977 20541316 ~ 20560059 (-)
XLOC_013393 bcl2l13 coding upstream 49346 20581685 ~ 20608300 (-)
XLOC_013394 wnt2 coding upstream 80902 20613241 ~ 20636549 (-)
XLOC_013395 BX470130.1 coding upstream 101450 20633789 ~ 20633923 (-)
XLOC_013396 asz1 coding upstream 110039 20642378 ~ 20674121 (-)
XLOC_013384 BX323829.1 misc downstream 974296 19542102 ~ 19542231 (-)
XLOC_013381 CT863714.7 non-coding downstream 1061286 19455144 ~ 19455241 (-)
XLOC_013380 NA non-coding downstream 1061660 19454800 ~ 19454867 (-)
XLOC_013398 BX470160.1 non-coding upstream 313851 20846190 ~ 20846313 (-)
XLOC_013411 BX548157.1 non-coding upstream 1179957 21712296 ~ 21720051 (-)
XLOC_013417 CT573204.2 non-coding upstream 1551433 22083772 ~ 22083886 (-)
XLOC_013420 CR933017.1 non-coding upstream 2018256 22550595 ~ 22552314 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_03902606_03908849 IGHMBP2 coding CI01000013 null 3902606 ~ 3909058 (+)