XLOC_013392 (dennd11)


Basic Information

Item Value
gene id XLOC_013392
gene name dennd11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20541316 ~ 20560059 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026455
CATCATCAAAACAGTGTCGACAGCGTACGCCTGGGCAGCGTCTGTTCAGCTGTctggatttactacatttcaGGACCGTTTGAATCGCAAGCGCTATGTTCCGTTTCACGCGTCGCGTTTGTGGCTCAGACTGACTGCTCATCACCGAGCGTTACTTTGTTTATTTCCACCTTTATCAGTATCGATAAACAAGAGTATGGTTGAGCAGTCGGATCGCGCTCCGCTGCTGGACTGGGAGGAGATCCCCCCGGCCGAACTTGCTCCATCGGTTCCATCACCGGACACTGGCGATTCATTACAGTCCGGGCTATCAAGTTACCCAACTGAGGCCACATTAGGGGCAGATATCACCTTGAACACGAGCCCGACGAGACCGAGCAGTGTAGCAGCTGTTCATTCTCCTCATAAACAGCACAGCGGCCCGGGAGGAGATGCTCTAGCTGAGGAGGATGAGCCGGGAGACTGCGCCTTCCACGGGCTCTCGGTCAGGGACCGCAGGATTACTGGATGGGAAGAGAAAGATCAAATCGTTGCTGTGTTTGTGGTCACTTTCGACACAAGATCGGgGAACATGATAGAATGGTGCCTACCTCATGATGTCAACCTGGAAGGAGTAGAGTTCAAGTCTATGGCCAGCGGCTCCCATCGGATCTCAAGTGACTTCATATATTTCCGCAAAGGCTGTTACTTTGGACTAGCGTGCTTTGCTAACATGCCTGTGGAGAGTGAGCTGGAACGTGGAGCGAGGATGAAATCTGTCGGGATCTTGTCTCCTTCATACACATTGTTATACCGTTATATGCACTTCTTAGAAAACCAAGTCCGGCACCAGTTGCAGTGTCCAGGCCAATACTCTCCACTGGAGGCTTTTTATGAGGATAAAAAGGCAGTGTTGCCTTCGGGAGGAAATGGTTTGGTCACAGCTTGCCCAACCAGTGCTCTTGCACCCATAGTCAACCGCTGCATGCATCCAGAGATGAAGATCACACACCCGGCTGGCTGCATGTCCCAGTTCATCCGCTTCTTTGGAGAGCAGATTATGGTTCTTTGGAAGTTTGCTTTGCTCAGGAAACGCATCCTCATTTTCTCTCCTCCTCCCGTCGGTGTGGTCTGCTATCGGGTTTATTGTTGCTGCTGCCTTGCTAATGTGTCCATTCCTGGGATGGGTGTGTCTGTTCCGGAGTTTCGCCCCTTCTTCTACATCAATGTTGCTGACATCCCTGCTCTTGAGACTGAACTGTCTTATGTGGCCTGTACCACAGAGAAGATCTTTGAGGAAAAGAAGGAGCTGTATGATGTGTACATTGACAATCAGAACGTGAAGACGCACAGAGAGAGTCTCCAGCCTCTGCTTCGACTCAACAGTGCAGACAGAGAGaagtatcgcaagctctgtgagcAAAGGCAGTTGCTGCTGTACTCTCAGGAGGTGGATGGAGATTGCACATCCAATGAGGAAGACCTCTTCATTCTGTTCTTCATGGAGCAGAACAACCGAATCTTCCAGACCCTGTCTGAGGTGGCGGTGAGTGCCGATCCAACCCTGACTGCTGAGCACGTGCGAGCCATGGGGCTGGATCCTCAAGGCGATCGCGGCTTCCTTGTGGACCTGCTGGAAATCTACGGCATCGACGTCATGCTGGTTATCGACAACCCCTGCTGCCCGTAAGACCCTCCGTCTCTGCCCCTCTCTCTGGAGTCCTGTTTTCTGTTCGGGCTTAAATTCACATCCTACTGATCACCTGCttgtcttttctttcttttctctggCTTGGCTTTCTCAGGAGCCACTCCTGACCCCTCTGGACCACACTGATACTGCCAACACCAACAACCCAAGTCCGTCTACAGGCTTTTTCGCGCAGCCAGTGGCGTCTTTCTGCTTCTCTGTCTATCTGTGTGCTTTGTATTCTACCAGCCATCTTGGATTTCTTCTCAACTCTGCCTAAGCTTGTTTCCAAACATGATCTCTGTGCCTCTTTATTCCTGCTTTTTCAATCTGTGGTCTTCAGTTGTGACTTTGTTTTTCTAGCCAGTGCTGTTTGGGGGAACTGATGTGATGTCCCCTATGGATATAAATCTGCTTGGACACCAGAGAATTGGAATAACGGTCCATCATTTCCTGGAtctacatgttttttttgtttgtttgctgggaACAACGGTTTAACGTCTGCTCTGAATGTCATATATTATGTATTTCTAAAAAGTTTGATGGTTGTTCATATTACACACTACTGTAACGGTGAGGATTTTCACAGTCTTCGCCACAACAATTCAATCATGTACATGTGAGAAGTCATTTCATTTGGGGAAGAACCTGGGCAAAGTCAAAAGTCAGTGTGTTATTTGTGATCTGTTGTGCATGGACTAATAGACACAAGTTTGGCTGCTGTAGTTTGACACGACATTTATTAATGTTCATGAATGGGAATGAACCACAATGTAGGAGGGTTTCAGTCATCCTTGTTTAACTCTTCAAATGTTAACTAATGAATGTGACTGACCTTTCAATGCTGTCTACACCTGTTCGAGATGTTTCtgttatattacacacacacacacacacacacacactgaacaggtATCACTGtactaaaaacaaattaaatggagCATAGAATGTGCATTTGTTTATCCCGGATAGGCCTATAATCATTGTCATCATTGGTATTGAAtgtaaattgtacatttaatgcTCCGGTTGATGCACACAgacgctgcattcatctttctgaAGAAATGAATGTGATTTCTGACTTTCTAATCGGTCAATGCTCATGGTTATTTTTTGTTGTGTATATATTTGGGTTtgtcatttaaatgtgtttgagtTGATCATTGCTGGATGACAGCAGAAAGACTGAGCTGATTGACAGTGGTTGTGTTTATATGTTCGTTCTATAAAGCCTAACTGGATGTTTAATAATTCATTGAGCTGcattaatagaatagaatatctAAATGGAAAAGGATTTACCCATTCATTTTACTGTCAGTTTCACTGTCCATCTAATTTTCAACATGCCAACAAATGTGACATTCGACTTTTGGAATTGAGTGCAGGCACTCAGGCTTGATGGAGAAAAGTTATTTAAAtcacctaaataaaatatttaaatgaataataaataatactattgcTTACAAACTAAATTTGATTAAATGTGAGTTTCGTTTTTACATTTCTAATAAATCAGAGAGAATTcttctgcattattattattcagaccATCCTCTTGTAGGATGTGGTTTGGTTATGTTAAGAGTTTGATTGTGATTGAATGAAGAATGTATATGAAGCAGCCGTGTAACATAACTGTACAGGATGAATTGTCTggttttgtgtatgtgtgattttcttttttgctttttgtcAGTTATTAAGTGTTACACAAGTCTTTGTCACAATAACAAGCTAAATGAATGTTGAGTTTTACTCTAATGGTATCACAAAGCACTAGTGTAATCCACACTACCTATACAGTAATACAAACTAACAGCATGTGTCTGTTGTTTTAAAGCCAGTGATTCCTATTCACTGCCATTTTGAATAAATGGTTCCTTTTCTACCATATGCTTTGTGGTGTAGTTCTGAGATAACAACACTCGCTTAAAGAAAAATCTTTTAGTGTGTGTGAAATCAAAAATTACAGTTTAGTTTGCTAGCACACAtcgttattctttagg
>TCONS_00026456
CGACAGCGTACGCCTGGGCAGCGTCTGTTCAGCTGTctggatttactacatttcaGGACCGTTTGAATCGCAAGCGCTATGTTCCGTTTCACGCGTCGCGTTTGTGGCTCAGACTGACTGCTCATCACCGAGCGTTACTTTGTTTATTTCCACCTTTATCAGTATCGATAAACAAGAGTATGGTTGAGCAGTCGGATCGCGCTCCGCTGCTGGACTGGGAGGAGATCCCCCCGGCCGAACTTGCTCCATCGGTTCCATCACCGGACACTGGCGATTCATTACAGTCCGGGCTATCAAGTTACCCAACTGAGGCCACATTAGGGGCAGATATCACCTTGAACACGAGCCCGACGAGACCGAGCAGTGTAGCAGCTGTTCATTCTCCTCATAAACAGCACAGCGGCCCGGGAGGAGATGCTCTAGCTGAGGAGGATGAGCCGGGAGACTGCGCCTTCCACGGGCTCTCGGTCAGGGACCGCAGGATTACTGGATGGGAAGAGAAAGATCAAATCGTTGCTGTGTTTGTGGTCACTTTCGACACAAGATCGGgGAACATGATAGAATGGTGCCTACCTCATGATGTCAACCTGGAAGGAGTAGAGTTCAAGTCTATGGCCAGCGGCTCCCATCGGATCTCAAGTGACTTCATATATTTCCGCAAAGGCTGTTACTTTGGACTAGCGTGCTTTGCTAACATGCCTGTGGAGAGTGAGCTGGAACGTGGAGCGAGGATGAAATCTGTCGGGATCTTGTCTCCTTCATACACATTGTTATACCGTTATATGCACTTCTTAGAAAACCAAGTCCGGCACCAGTTGCAGTGTCCAGGCCAATACTCTCCACTGGAGGCTTTTTATGAGGATAAAAAGGCAGTGTTGCCTTCGGGAGGAAATGGTTTGGTCACAGCTTGCCCAACCAGTGCTCTTGCACCCATAGTCAACCGCTGCATGCATCCAGAGATGAAGATCACACACCCGGCTGGCTGCATGTCCCAGTTCATCCGCTTCTTTGGAGAGCAGATTATGGTTCTTTGGAAGTTTGCTTTGCTCAGGAAACGCATCCTCATTTTCTCTCCTCCTCCCGTCGGTGTGGTCTGCTATCGGGTTTATTGTTGCTGCTGCCTTGCTAATGTGTCCATTCCTGGGATGGGTGTGTCTGTTCCGGAGTTTCGCCCCTTCTTCTACATCAATGTTGCTGACATCCCTGCTCTTGAGACTGAACTGTCTTATGTGGCCTGTACCACAGAGAAGATCTTTGAGGAAAAGAAGGAGCTGTATGATGTGTACATTGACAATCAGAACGTGAAGACGCACAGAGAGAGTCTCCAGCCTCTGCTTCGACTCAACAGTGCAGACAGAGAGaagtatcgcaagctctgtgagcAAAGGTACCAACATCTGAACCTCTTatgagaaagaaaaaacaataaaagtatgtATTTCCACAGGCATATGATCATATCAATGGGTTTCAGGCAGTTGCTGCTGTACTCTCAGGAGGTGGATGGAGATTGCACATCCAATGAGGAAGACCTCTTCATTCTGTTCTTCATGGAGCAGAACAACCGAATCTTCCAGACCCTGTCTGAGGTGGCGGTGAGTGCCGATCCAACCCTGACTGCTGAGCACGTGCGAGCCATGGGGCTGGATCCTCAAGGCGATCGCGGCTTCCTTGTGGACCTGCTGGAAATCTACGGCATCGACGTCATGCTGGTTATCGACAACCCCTGCTGCCCCCAGTGCTGTTTGGGGGAACTGATGTGATGTCCCCTATGGATATAAATCTGCTTGGACACCAGAGAATTGGAATAACGGTCCATCATTTCCTGGAtctacatgttttttttgtttgtttgctgggaACAACGGTTTAACGTCTGCTCTGAATGTCATATATTATGTATTTCTAAAAAGTTTGATGGTTGTTCATATTACACACTACTGTAACGGTGAGGATTTTCACAGTCTTCGCCACAACAATTCAATCATGTACATGTGAGAAGTCATTTCATTTGGGGAAGAACCTGGGCAAAGTCAAAAGTCAGTGTGTTATTTGTGATCTGTTGTGCATGGACTAATAGACACAAGTTTGGCTGCTGTAGTTTGACACGACATTTATTAATGTTCATGAATGGGAATGAACCACAATGTAGGAGGGTTTCAGTCATCCTTGTTTAACTCTTCAAATGTTAACTAATGAATGTGACTGACCTTTCAATGCTGTCTACACCTGTTCGAGATGTTTCtgttatattacacacacacacacacacacacacactgaacaggtATCACTGtactaaaaacaaattaaatggagCATAGAATGTGCATTTGTTTATCCCGGATAGGCCTATAATCATTGTCATCATTGGTATTGAAtgtaaattgtacatttaatgcTCCGGTTGATGCACACAgacgctgcattcatctttctgaAGAAATGAATGTGATTTCTGACTTTCTAATCGGTCAATGCTCATGGTTATTTTTTGTTGTGTATATATTTGGGTTtgtcatttaaatgtgtttgagtTGATCATTGCTGGATGACAGCAGAAAGACTGAGCTGATTGACAGTGGTTGTGTTTATATGTTCGTTCTATAAAGCCTAACTGGATGTTTAATAATTCATTGAGCTGcattaatagaatagaatatctAAATGGAAAAGGATTTACCCATTCATTTTACTGTCAGTTTCACTGTCCATCTAATTTTCAACATGCCAACAAATGTGACATTCGACTTTTGGAATTGAGTGCAGGCACTCAGGCTTGATGGAGAAAAGTTATTTAAAtcacctaaataaaatatttaaatgaataataaataatactattgcTTACAAACTAAA
>TCONS_00026457
GGAGGTTGATCGCAATAAAAACCTTTAGCACCACGTGAGCGGAAGTGTGTGACATCATCAAAACAGTGTCGACAGCGTACGCCTGGGCAGCGTCTGTTCAGCTGTctggatttactacatttcaGGACCGTTTGAATCGCAAGCGCTATGTTCCGTTTCACGCGTCGCGTTTGTGGCTCAGACTGACTGCTCATCACCGAGCGTTACTTTGTTTATTTCCACCTTTATCAGTATCGATAAACAAGAGTATGGTTGAGCAGTCGGATCGCGCTCCGCTGCTGGACTGGGAGGAGATCCCCCCGGCCGAACTTGCTCCATCGGTTCCATCACCGGACACTGGCGATTCATTACAGTCCGGGCTATCAAGTTACCCAACTGAGGCCACATTAGGGGCAGATATCACCTTGAACACGAGCCCGACGAGACCGAGCAGTGTAGCAGCTGTTCATTCTCCTCATAAACAGCACAGCGGCCCGGGAGGAGATGCTCTAGCTGAGGAGGATGAGCCGGGAGACTGCGCCTTCCACGGGCTCTCGGTCAGGGACCGCAGGATTACTGGATGGGAAGAGAAAGATCAAATCGTTGCTGTGTTTGTGGTCACTTTCGACACAAGATCGGgGAACATGATAGAATGGTGCCTACCTCATGATGTCAACCTGGAAGGAGTAGAGTTCAAGTCTATGGCCAGCGGCTCCCATCGGATCTCAAGTGACTTCATATATTTCCGCAAAGGCTGTTACTTTGGACTAGCGTGCTTTGCTAACATGCCTGTGGAGAGTGAGCTGGAACGTGGAGCGAGGATGAAATCTGTCGGGATCTTGTCTCCTTCATACACATTGTTATACCGTTATATGCACTTCTTAGAAAACCAAGTCCGGCACCAGTTGCAGTGTCCAGGCCAATACTCTCCACTGGAGGCTTTTTATGAGGATAAAAAGGCAGTGTTGCCTTCGGGAGGAAATGGTTTGGTCACAGCTTGCCCAACCAGTGCTCTTGCACCCATAGTCAACCGCTGCATGCATCCAGAGATGAAGATCACACACCCGGCTGGCTGCATGTCCCAGTTCATCCGCTTCTTTGGAGAGCAGATTATGGTTCTTTGGAAGTTTGCTTTGCTCAGGAAACGCATCCTCATTTTCTCTCCTCCTCCCGTCGGTGTGGTCTGCTATCGGGTTTATTGTTGCTGCTGCCTTGCTAATGTGTCCATTCCTGGGATGGGTGTGTCTGTTCCGGAGTTTCGCCCCTTCTTCTACATCAATGTTGCTGACATCCCTGCTCTTGAGACTGAACTGTCTTATGTGGCCTGTACCACAGAGAAGATCTTTGAGGAAAAGAAGGAGCTGTATGATGTGTACATTGACAATCAGAACGTGAAGACGCACAGAGAGAGTCTCCAGCCTCTGCTTCGACTCAACAGTGCAGACAGAGAGaagtatcgcaagctctgtgagcAAAGGCAGTTGCTGCTGTACTCTCAGGAGGTGGATGGAGATTGCACATCCAATGAGGAAGACCTCTTCATTCTGTTCTTCATGGAGCAGAACAACCGAATCTTCCAGACCCTGTCTGAGGTGGCGGTGAGTGCCGATCCAACCCTGACTGCTGAGCACGTGCGAGCCATGGGGCTGGATCCTCAAGGCGATCGCGGCTTCCTTGTGGACCTGCTGGAAATCTACGGCATCGACGTCATGCTGGTTATCGACAACCCCTGCTGCCCGAGCCACTCCTGACCCCTCTGGACCACACTGATACTGCCAACACC

Function

symbol description
dennd11 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be active in cytoplasm. Orthologous to human DENND11 (DENN domain containing 11).

GO:

id name namespace
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-80 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be active in cytoplasm. Orthologous to human DENND11 (DENN domain containing 11).

Ensembl:

ensembl_id ENSDARG00000062381

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026455 False 3690 mRNA 0.44 9 20541316 20560007
TCONS_00026456 False 2859 nonsense_mediated_decay 0.45 9 20541850 20559990
TCONS_00026457 True 1762 mRNA 0.52 10 20543177 20560059

Neighbor

gene id symbol gene type direction distance location
XLOC_013391 ighmbp2 coding downstream 8977 20516527 ~ 20532339 (-)
XLOC_013390 paqr5a coding downstream 75255 20459888 ~ 20466061 (-)
XLOC_013389 kif23 coding downstream 82476 20435821 ~ 20458840 (-)
XLOC_013388 NA coding downstream 221443 20285665 ~ 20319873 (-)
XLOC_013387 NA coding downstream 392219 20140072 ~ 20149097 (-)
XLOC_013393 bcl2l13 coding upstream 21626 20581685 ~ 20608300 (-)
XLOC_013394 wnt2 coding upstream 53182 20613241 ~ 20636549 (-)
XLOC_013395 BX470130.1 coding upstream 73730 20633789 ~ 20633923 (-)
XLOC_013396 asz1 coding upstream 82319 20642378 ~ 20674121 (-)
XLOC_013397 cttnbp2 coding upstream 166090 20726149 ~ 20822045 (-)
XLOC_013384 BX323829.1 misc downstream 999085 19542102 ~ 19542231 (-)
XLOC_013386 NA non-coding downstream 657022 19883591 ~ 19884294 (-)
XLOC_013381 CT863714.7 non-coding downstream 1086075 19455144 ~ 19455241 (-)
XLOC_013380 NA non-coding downstream 1086449 19454800 ~ 19454867 (-)
XLOC_013398 BX470160.1 non-coding upstream 286131 20846190 ~ 20846313 (-)
XLOC_013411 BX548157.1 non-coding upstream 1152237 21712296 ~ 21720051 (-)
XLOC_013417 CT573204.2 non-coding upstream 1523713 22083772 ~ 22083886 (-)
XLOC_013420 CR933017.1 non-coding upstream 1990536 22550595 ~ 22552314 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_03885988_03895027 KIAA1147 coding CI01000013 null 3885988 ~ 3895027 (+)