G476115


Basic Information

Item Value
gene id G476115
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000330
NCBI id null
chromosome length 4651236
location 4320751 ~ 4324343 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU546334
CACGTTAGCTGTCATGCAGTAAGCGCGCTACTATTCAGCTTTTACAACACTTGAATAGCTCACATTTTTCTAGGTTAACGTTAAAGTAACGTTGGATGTCCTGCCCGATGTACTGTAATTACCACATAGACCAGCTGTTAACATTCTGTCTGTCACAGAGTGTGTGATTTCGCCACTTCCTGTGGATTTTTTTTCAAAGCAATGAATAAAATTTTGGTCGACTAAGCCTCTTCTCATCGACTAACGGTTAGTCGACTATTAGAGGGCAGCCCTACTGAATTCATAGTATTAATAAAACAGAAGGCGAAAAGTACCCGGGAGTCTCACGGCCACGGGAGAGGAGTTGTAAATGACGGTGAAGCAACACAACTGAGGCTGCAAGTAACATGTAATGATGGGTCGGCAGAGCGGGGATCCATTTGCAAGCTTTATTAAGAACAGTATTTACACAGGTAGACAGGGGCAAAGGCAGGAACATAAACAAGGACAGGCAATGGTCGAGGCAGGCAGCAGACAAGCAGTATCGGGTCACAGGCAGAGATCAGGGCAGGCGGCAAACAAACACAGTCCAGTACACAGGCAAGGTTCAGGGCAGGCAGCAGAGAATCACAAAGAATAAACAATCCGACGGAAACCAGGAAACAGTCCACAAGAAAACGCTTAGTAATGATCACCGGGGCAAATCAAGACTTCGCAATGAGGTTGTGTGTGTGTAAGTCCTTTATAGTCCAGGTAGTGTGCTAAGCTGTATGTGGCAACTGGTGATTGGTGTGGAGTGTGCATGTGATTGGCAAGGAGGATTATGGGAAATGGAGTCCAGGAACTGACAGGAACAGACAGTGATCGTGACATAACATGTGACAACATGGCAGATGTATAACATTCGATTTCATTCCTACTTCATACTATATACAATTCGGAAGCTTGTTTCTGCCACTGAATAAAAAATAAAAAGGGTAATTGTGACTTTTTACCTTACAATTCTGACTTTTTTTTTTTTGGCAACTGCGAGTTTATTTCTCACAATTTTGACTTTTTTT
>TU546336
CACGTTAGCTGTCATGCAGTAAGCGCGCTACTATTCAGCTTTTACAACACTTGAATAGCTCACATTTTTCTAGGTTAACGTTAAAGTAACGTTGGATGTCCTGCCCGATGTACTGTAATTACCACATAGACCAGCTGTTAACATTCTGTCTGTCACAGAGTGTGTGATTTCGCCACTTCCTGTGGATTTTTTTTCAAAGCAATGAATAAAATTTTGGTCGACTAAGCCTCTTCTCATCGACTAACGGTTAGTCGACTATTAGAGGGCAGCCCTACTGAATTCATAGTATTAATAAAACAGAAGGCGAAAAGTACCCGGGAGTCTCACGGCCACGGGAGAGGAGTTGTAAATGACGGTGAAGCAACACAACTGAGGCTGCAAGTAACATGTAATGATGGGTCGGCAGAGCGGGGATCCATTTGCAAGCTTTATTAAGAACAGTATTTACACAGGTAGACAGGGGCAAAGGCAGGAACATAAACAAGGACAGGCAATGGTCGAGGCAGGCAGCAGACAAGCAGTATCGGGTCACAGGCAGAGATCAGGGCAGGCGGCAAACAAACACAGTCCAGTACACAGGCAAGGTTCAGGGCAGGCAGCAGAGAATCACAAAGAATAAACAATCCGACGGAAACCAGGAAACAGTCCACAAGAAAACGCTTAGTAATGATCACCGGGGCAAATCAAGACTTCGCAATGAGGTTGTGTGTGTGTAAGTCCTTTATAGTCCAGGTAGTGTGCTAAGCTGTATGTGGCAACTGGTGATTGGTGTGGAGTGTGCATGTGATTGGCAAGGAGGATTATGGGAAATGGAGTCCAGGAACTGACAGGAACAGACAGTGATCGTGACATAACATGTGACAACATGGCAGATGTATAACATTCGATTTCATTCCTACTTCATACTATATACAATTCGGAAGCTTGTTTCTGCCACTGAATAAAAAATAAAAAGGGTAATTGTGACTTTTTACCTTACAATTCTGACTTTTTTTTTTTTGGCAACTGCGAGTTTATTTCTCACAATTTTGACTTTTTTT
>TU546337
CACGTTAGCTGTCATGCAGTAAGCGCGCTACTATTCAGCTTTTACAACACTTGAATAGCTCACATTTTTCTAGGTTAACGTTAAAGTAACGTTGGATGTCCTGCCCGATGTACTGTAATTACCACATAGACCAGCTGTTAACATTCTGTCTGTCACAGAGTGTGTGATTTCGCCACTTCCTGTGGATTTTTTTTCAAAGCAATGAATAAAATTTTGGTCGACTAAGCCTCTTCTCATCGACTAACGGTTAGTCGACTATTAGAGGGCAGCCCTACTGAATTCATAGTATTAATAAAACAGAAGGCGAAAAGTACCCGGGAGTCTCACGGCCACGGGAGAGGAGTTGTAAATGACGGTGAAGCAACACAACTGAGGCTGCAAGTAACATGTAATGATGGGTCGGCAGAGCGGGGATCCATTTGCAAGCTTTATTAAGAACAGTATTTACACAGGTAGACAGGGGCAAAGGCAGGAACATAAACAAGGACAGGCAATGGTCGAGGCAGGCAGCAGACAAGCAGTATCGGGTCACAGGCAGAGATCAGGGCAGGCGGCAAACAAACACAGTCCAGTACACAGGCAAGGTTCAGGGCAGGCAGCAGAGAATCACAAAGAATAAACAATCCGACGGAAACCAGGAAACAGTCCACAAGAAAACGCTTAGTAATGATCACCGGGGCAAATCAAGACTTCGCAATGAGGTTGTGTGTGTGTAAGTCCTTTATAGTCCAGGTAGTGTGCTAAGCTGTATGTGGCAACTGGTGATTGGTGTGGAGTGTGCATGTGATTGGCAAGGAGGATTATGGGAAATGGAGTCCAGGAACTGACAGGAACAGACAGTGATCGTGACATAACATGTGACAACATGGCAGATGTATAACATTCGATTTCATTCCTACTTCATACTATATACAATTCGGAAGCTTGTTTCTGCCACTGAATAAAAAATAAAAAGGGTAATTGTGACTTTTTACCTTACAATTCTGACTTTTTTTTTTTTGGCAACTGCGAGTTTATTTCTCACAATTTTGACTTTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU546334 False 1040 lncRNA 0.43 2 4320751 4324343
TU546336 False 1040 lncRNA 0.43 2 4320751 4324343
TU546337 True 1040 lncRNA 0.43 2 4320751 4324343

Neighbor

gene id symbol gene type direction distance location
CI01000330_04126471_04281733 GRM8A, GRM6, GRM8, GRM8B coding upstream 39018 4126471 ~ 4281733 (+)
CI01000330_04109116_04119729 ZNF800A coding upstream 200447 4109116 ~ 4120304 (+)
CI01000330_04098886_04101731 NA coding upstream 218945 4098098 ~ 4101806 (+)
CI01000330_04061721_04074563 NA coding upstream 246130 4061721 ~ 4074621 (+)
CI01000330_04025928_04040081 MAN2C1 coding upstream 280510 4025717 ~ 4040241 (+)
CI01000330_04356072_04383072 POT1 coding downstream 31321 4355664 ~ 4383193 (+)
CI01000330_04384117_04388414 GPR37A coding downstream 59572 4383915 ~ 4388465 (+)
CI01000330_04491976_04518040 WASL, WASLA coding downstream 167633 4491976 ~ 4518040 (+)
CI01000330_04549486_04558357 IQUB coding downstream 225143 4549486 ~ 4559100 (+)
CI01000330_04561065_04566268 SLC13A1 coding downstream 236503 4560846 ~ 4566515 (+)
G476113 NA non-coding upstream 929 4319540 ~ 4319822 (+)
G476108 NA non-coding upstream 11946 4308496 ~ 4308805 (+)
G476045 NA non-coding upstream 212954 4107557 ~ 4107797 (+)
G475482 NA non-coding upstream 329139 3986610 ~ 3991612 (+)
G475470 NA non-coding upstream 386225 3934266 ~ 3934526 (+)
G476123 NA non-coding downstream 7344 4331687 ~ 4331957 (+)
G476129 NA non-coding downstream 50769 4375112 ~ 4439836 (+)
G476184 NA non-coding downstream 273121 4597464 ~ 4621099 (+)
G475483 NA other upstream 326813 3993026 ~ 3993938 (+)
G475421 NA other upstream 603332 3716544 ~ 3717419 (+)
G475236 NA other upstream 730254 3585475 ~ 3590497 (+)
G475235 NA other upstream 1229518 3072547 ~ 3091233 (+)
G474819 NA other upstream 1644309 2675912 ~ 2676442 (+)

Expression


Co-expression Network