XLOC_013397 (cttnbp2)


Basic Information

Item Value
gene id XLOC_013397
gene name cttnbp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20726149 ~ 20822045 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026466
ACGACATCTTGAGCCTACATGTTCAAAAATTCAGGGCACTGAAAAACAAGCTCCATTCATCTCCATCTTATAGGGAACCTTTAAATACAAACTCGACTGGCGACAGAGAGGTTAACCCAAGCACTACAAAAATAGGAGCGCGTTCGTGTCACTCCCTCAAGGCTGTTGTTGGTTCACACCTCCTCTTTTCAGGTTTACATCTGGACTGAGCTTCACAACCTGCTCCCGTCAAAATCTAGTCCAACGTGCGTCCACAGCCCTGCTCAACGCATTTACCGGCGAAAGATGAGTACTCGGCTTTTTGCAATAGTCCTGCAGCAGTGTAATAGTTAAAATGAGTGGCGAATGCGTTATTTGATGTGTGTGTGGAGCCTGAGCCTGAGCAGTCCTCTACAGTGAGAAGATGGCGTCGGACGGAGCGAAAGGGGAGCAGCCGCCTCCGCTACAAACACTAGTAACCACTGGCCATGGAAGCGTCGAGGCGAAATGCGAGCTGAACATCGACAACCTGAGCAAACCAGAGCTTCTGACCCTTCTGAGCATCATGGAGGGAGAACTTGAGGCCAGAGACCTGGTCATTGAAGCTCTTAGGGCTCGAAGAAAAGAAGTGTTCCTGCAGGAGCGATATGGACAGTTCAGTCTGACAGACCCATTCCTCGCCATGCAGAGGGACTTTGAGTCAGGGATGGGCCCAAAGGATCGTAGGCCAGTCAGCGCAAGCCCCATCACTGTGCTGGAAGCTGTTATGGCCCACTGCCGTAAGATGCAGGAGAAGATGTCTGCCCAACTCTCGGCTGCTGAGACCAGACAGAAGAGGCTTGAAATGGAGAAACTGCAGCTGCAGAGCCTGGAGCAGGAACACAGGAAGCTGTCAGCTCAGCTGAAGGATGAGCGAGAGAAAAACAAACACGTGGTGATGTCACTGGTGCATGAATGCAAGCAGCTAGCTGCTCGTGTGGTCGAAGAGAACCAGCGCTTTGAGGAACTTTCGTCCCGTACTGAGCAGGATGGTCGATCGGTGGGACGTCTGGAAGAAGAACTGGCATCTGAACGACGTCGTAGCCAACAGATGGAAGCGGAGATGGAGAAACAGTTGGCTGAATTTGACACAGAGCGAGAGCAGCTACGTGCCAGGCTTAGCCGCGAGGAGACTCGTGCTGTGGAACTCCGGGCTGAAAGTGAGAATCTCCGCTTGCAGGTGGAGCAGCTAAGAACTGAAAGATGCAAAGATTCCCCACCACTGCCTTCTGTTACCCCAGCATCTGTCTCTGTTAAACCCAAGGCTATGGTGTCTGTGGCTGTGGGCACTGAAGCAACTGTTTGCAAGACTGTCTCTTCTCAGACAGATGCACCGCTGGAAAATGAAGGAGCTAAGAAAGTGCCACTTTCCATCCCTGTCAAGCCTAGTGGCTCCACCTATGCTAGCATGAACCTACCTAAGACCTCCAGTGCAGGACGGGGGCTACACCATGGGAGCTCACAGGCAGAAAATGGAGGGGACGGTCAAACACATCTACATAGCTCACATTCACCTGGTGTATCTTCTACCTTGCCGACTGGGGTTAGTCCCCGCGTCCAGGCAGCCCGTTACAAATTCCAACCCTCTGCCTCAGAGCAGGACCAAAATGGAACCGCAAACCAGAGCCCCCCCTCGCGTGACCTGTCCCCCACAAATCGAGACAACTTTGCAGCTAAACAACAGGCTCGACACACTGTCACACAGGTTCTGTCCCGCTTCACAAGCCCTCCAGCAGGGGGACCCCCTGCAGCCCTTCGGCCCGGTCTGCCACATTCTACATCTGAGGGAGGACCCTTCACAGGACGTTTAGGCCACCCCCAGATAGGCCTTAAATCACCAACTGTGGCCCGAATCGACAGGGGTAACCCACCCCCGATCCCACCAAAAAAACCTGGACTGTCCCAGACACCATCCCCTCCACACCCACCAATTAAAGTAGTAGGTGAAGCTAGCAGGTCCCCAGGAACAGGACTTGGGGTGGGTCTTGCCAAATCAGCTACCACCCCTCAGCTTCCACCAAAACCCTCCTTAGATATGGGTGGTACAGTCCCAGCCATGACTGCGTCACAGGTGGGTGCATCCTGTTCTGGCTGGCCATGGGGGCAGCAGCCAACAGCAGCATGTGTGGAGTGTCCCCCTGTCATCACCTCCTCCACAGCTACCATTGTCAGTAGCCCCTCCATAAACCCATCTAGTCTTCCATCCCATAGCCCCCAGCACCTGGGCAGTCCCCTGGCAGCAGCATCAGGCTGGTGTCCCTCCATAGTCCCCTCGCTAACCTGTGGTGACCCCGTCCCCCTGGATGACGGGCAAACCCTTCTCCTCCAAGCTGCTTCCCAGGGAAATGTCACTTTATTGTCTATGCTGCTTAACCAAGATCCACTATTGGATATTCATCACCATCAACATGAATTAACCTCTGCCTTGATCTCTGCTGCTCATAATGGACACACAGACTGCTTAAATCTGCTGCTGACTTCAGGAGCATCTGCTGATGCTGCCGATGAAACAGGATTTTCGCCGTTACATGCCGCCAtgcaaaatggccaccatggGTGTGCGAGAGCTCTGGTGAACTGTGGTGCTGATTTGGAGAAGGAGTATTCACAGGGAAGGACCCCGCTGTACCTGGCCTGTGAACAGGGACATGTGCAGTGTGTGAAAGTGTTGTTAGACGCAGGAGCAGACCGAACACACGTTACCACTGACAGCTGCACAGCTCTGCACGCTGCAGTCAGTTCAGGTCATGTGGACACTCTGAAGCTCCTGCTGCACCACCCGTCATCTGAACCAGACCATCTGAACAGCCCAACGTTTCCTTCAGACGCCAAACAGGAGCTCCAAAAGCCTGGCATAAGCAAGGCATGTCACATCCTCAACCACAGTAACCAGGATGGCTGGACTGCCGCCCACATTGCTGCATCCAGGGGCTACAAGAAATGCCTGGAGGTTTTGTGTAACCACAGTCAACACGACATGGAGAGGAGGGACAAATGCAATCGCACCATACATGATGTTGCCACAGACGACTGCAAAGACCTTCTAGAGAACCTGGACTGGTACACAGTGGTTGTACAGGTGCTCATGGGCTCGCCGGAGCGTCTTTGTCCTGTGGATCTCCTGGAAGACGGCTGCACTGTTGGCAAAGTTACAGTTCAGCGCCACACAAGCTGGGAGGAGTTAACAGAAAGCCTGAGTCACCTGCTGACCAATCATCTCCAGCTGATTTGTGGGAGCTGGGAACTGCAAGACGTTCTGGCCAGAGCTGACACTTTGGGCCTTTCTGCCAACAGCATAGCCTCCGTGATTATAGGTGATGCTGTCTGGATGGCGGGGCAGGATCTGGCTCAGTCTCCGTGGGATCTCGTTCGCAAGCGGCTGAGTCAACGGATCACTATACGCCTTAAAGGCCTGTCAGAGTGTGCTCTGGATGAGATGACGTACGACTCCCTGATCTCCGTTCAGCTGCTGCAGAACTACGTCCGCCTGGTGGAACAGTACCATAATGTTATTTTCCATGGGCTGGAGGGAAGCTTTCAGGAGTACATCGCCAACCAGATATCTCATTATATCAAGCACAGACAAGAGGCTCAGGGGATCATCTGCGATGTCATCAGGGTGGAGATAGAGGAGAACCTATCAAAAGAGCAGCTGCTGGAGATCTTCATCAATTGTGGGTTCCTGGTGTCTCTGCATGAAAGCAGCGCTGGTCATTGTGTTGTGGTGGTTCTGGAGGGTCTGGAAAGAGCCCACTCGCTTAGCCACATCCTGGGAGATCTGTGTGAAGCCCTGGAGAACCGAGGATCTGTCTATTCTCTCTCCCTGAACCATGGTCATGATGGGCTGTACTATTTCCGGGAAGGGAGTTTTTTAATGGGAACTCTGGCCAAGCCTCGTCTGCAGGGTGCTGAGCTGCGATTACAGCAGCACTTCCGCTGGGTTCAGCTGCGATGGGACAGCGAGCCCCTCAATGGCATGCTGGGACGGCATATGCGCAGAAAGTTGCTCCACAAGACTCAGGGCCAGTGCTGGACGTCTGATGATCCTCTACAGAAAGCTCTTTCTTGGGTTTGCTCAGTGTGGCACCAGCTCAATGCCTGTCTTTCACGTCTGGGGACCTCAGAGGCCTTGCTGGGACCCTACATCTTCCTCTCTTGCCCTGTGAATCTGGAACAGACCCAGGCCATACCCAAGTGGTTGGTGAGGCTTTGGAATGCAGTGATTGTTCCACGAGTCGAGGACGCTGTTATATCGAGAGTAACAGCCAAACGCTCTCCCTCGCAGCGACGGTCCCCCAACAGCAAAGCTCTGACCCCGGGCCAGAGAGCAGTGGTCAAAGCTGCTCTCAATATCCTGCTCAATAAAGCTGTTCTGCAAGGTTGCCCACTGCCCAGACCAGAGATAGACAGGCTCTTGCCAGAGCTCCAGGGAGGATGCTTTCCTCTTTCCGCTATTGGCTCCGCCTATAGGAAAGGTGGAAGAAAAGGTGCTTGGAGACGAGCCAATACCAGTCCACGAAAAAAAGGAAGCCCCGCCTCTGGGAGGAGCTCCAGCTGCTCTTTTAGAGAAGGATCTCTAGCCAATTCTAGCACTCAGTCGATGACAAACGGCAATCATGCGAGTGGTTTGTCTCTCTGCTCTGATGATGAGACGGATCTCATTCGAGAACTCCAGAGCATGTGCTCTAGCAAATCAGAGCCAGACATAAGCAAGatTGCTCTGTTCAAAGAGGACTTCATCATGCTTCCACACTCGAGTTCGGCTTCTCCTCAGGGGACTGATGGCGAGGTCAACCAGCCCCAAACACACTCGCATACAGCAGACAGAGCTGTGGATAACACGCGTCCTCCAGCACAGCAGACTGACAGTGTTCACACTTCTCCTCGGCGAGTGATGAGGCCCAGGTCCCATCTACCTGTCCCGAGCAGCAGAGGATCTCAGCAGATGATCAGCAGCAGCTCTTCCCTTCAGACTCACAGCAGAGCCTCCACCAGCAGCAGCAGAACAAGGCAGCCCCCGtccaacaacaacacaaacaacCTCTCACAAGACCACATCTGGTTCCTGGACCCCAACTCTAATGAAAACTACAGTACCCACGGATAG
>TCONS_00026467
AAATGCGAGCTGAACATCGACAACCTGAGCAAACCAGAGCTTCTGACCCTTCTGAGCATCATGGAGGGAGAACTTGAGGCCAGAGACCTGGTCATTGAAGCTCTTAGGGCTCGAAGAAAAGAAGTGTTCCTGCAGGAGCGATATGGACAGTTCAGTCTGACAGACCCATTCCTCGCCATGCAGAGGGACTTTGAGTCAGGGATGGGCCCAAAGGATCGTAGGCCAGTCAGCGCAAGCCCCATCACTGTGCTGGAAGCTGTTATGGCCCACTGCCGTAAGATGCAGGAGAAGATGTCTGCCCAACTCTCGGCTGCTGAGACCAGACAGAAGAGGCTTGAAATGGAGAAACTGCAGCTGCAGAGCCTGGAGCAGGAACACAGGAAGCTGTCAGCTCAGCTGAAGGATGAGCGAGAGAAAAACAAACACGTGGTGATGTCACTGGTGCATGAATGCAAGCAGCTAGCTGCTCGTGTGGTCGAAGAGAACCAGCGCTTTGAGGAACTTTCGTCCCGTACTGAGCAGGATGGTCGATCGGTGGGACGTCTGGAAGAAGAACTGGCATCTGAACGACGTCGTAGCCAACAGATGGAAGCGGAGATGGAGAAACAGTTGGCTGAATTTGACACAGAGCGAGAGCAGCTACGTGCCAGGCTTAGCCGCGAGGAGACTCGTGCTGTGGAACTCCGGGCTGAAAGTGAGAATCTCCGCTTGCAGGTGGAGCAGCTAAGAACTGAAAGATGCAAAGATTCCCCACCACTGCCTTCTGTTACCCCAGCATCTGTCTCTGTTAAACCCAAGGCTATGGTGTCTGTGGCTGTGGGCACTGAAGCAACTGTTTGCAAGACTGTCTCTTCTCAGACAGATGCACCGCTGGAAAATGAAGGAGCTAAGAAAGTGCCACTTTCCATCCCTGTCAAGCCTAGTGGCTCCACCTATGCTAGCATGAACCTACCTAAGACCTCCAGTGCAGGACGGGGGCTACACCATGGGAGCTCACAGGCAGAAAATGGAGGGGACGGTCAAACACATCTACATAGCTCACATTCACCTGGTGTATCTTCTACCTTGCCGACTGGGGTTAGTCCCCGCGTCCAGGCAGCCCGTTACAAATTCCAACCCTCTGCCTCAGAGCAGGACCAAAATGGAACCGCAAACCAGAGCCCCCCCTCGCGTGACCTGTCCCCCACAAATCGAGACAACTTTGCAGCTAAACAACAGGCTCGACACACTGTCACACAGGTTCTGTCCCGCTTCACAAGCCCTCCAGCAGGGGGACCCCCTGCAGCCCTTCGGCCCGGTCTGCCACATTCTACATCTGAGGGAGGACCCTTCACAGGACGTTTAGGCCACCCCCAGATAGGCCTTAAATCACCAACTGTGGCCCGAATCGACAGGGGTAACCCACCCCCGATCCCACCAAAAAAACCTGGACTGTCCCAGACACCATCCCCTCCACACCCACCAATTAAAGTAGTAGGTGAAGCTAGCAGGTCCCCAGGAACAGGACTTGGGGTGGGTCTTGCCAAATCAGCTACCACCCCTCAGCTTCCACCAAAACCCTCCTTAGATATGGGTGGTACAGTCCCAGCCATGACTGCGTCACAGGTGGGTGCATCCTGTTCTGGCTGGCCATGGGGGCAGCAGCCAACAGCAGCATGTGTGGAGTGTCCCCCTGTCATCACCTCCTCCACAGCTACCATTGTCAGTAGCCCCTCCATAAACCCATCTAGTCTTCCATCCCATAGCCCCCAGCACCTGGGCAGTCCCCTGGCAGCAGCATCAGGCTGGTGTCCCTCCATAGTCCCCTCGCTAACCTGTGGTGACCCCGTCCCCCTGGATGACGGGCAAACCCTTCTCCTCCAAGCTGCTTCCCAGGGAAATGTCACTTTATTGTCTATGCTGCTTAACCAAGATCCACTATTGGATATTCATCACCATCAACATGAATTAACCTCTGCCTTGATCTCTGCTGCTCATAATGGACACACAGACTGCTTAAATCTGCTGCTGACTTCAGGAGCATCTGCTGATGCTGCCGATGAAACAGGATTTTCGCCGTTACATGCCGCCAtgcaaaatggccaccatggGTGTGCGAGAGCTCTGGTGAACTGTGGTGCTGATTTGGAGAAGGAGTATTCACAGGGAAGGACCCCGCTGTACCTGGCCTGTGAACAGGGACATGTGCAGTGTGTGAAAGTGTTGTTAGACGCAGGAGCAGACCGAACACACGTTACCACTGACAGCTGCACAGCTCTGCACGCTGCAGTCAGTTCAGGTCATGTGGACACTCTGAAGCTCCTGCTGCACCACCCGTCATCTGAACCAGACCATCTGAACAGCCCAACGTTTCCTTCAGACGCCAAACAGGAGCTCCAAAAGCCTGGCATAAGCAAGGCATGTCACATCCTCAACCACAGTAACCAGGATGGCTGGACTGCCGCCCACATTGCTGCATCCAGGGGCTACAAGAAATGCCTGGAGGTTTTGTGTAACCACAGTCAACACGACATGGAGAGGAGGGACAAATGCAATCGCACCATACATGATGTTGCCACAGACGACTGCAAAGACCTTCTAGAGAACCTGGACTGGTACACAGTGGTTGTACAGGTGCTCATGGGCTCGCCGGAGCGTCTTTGTCCTGTGGATCTCCTGGAAGACGGCTGCACTGTTGGCAAAGTTACAGTTCAGCGCCACACAAGCTGGGAGGAGTTAACAGAAAGCCTGAGTCACCTGCTGACCAATCATCTCCAGCTGATTTGTGGGAGCTGGGAACTGCAAGACGTTCTGGCCAGAGCTGACACTTTGGGCCTTTCTGCCAACAGCATAGCCTCCGTGATTATAGGTGATGCTGTCTGGATGGCGGGGCAGGATCTGGCTCAGTCTCCGTGGGATCTCGTTCGCAAGCGGCTGAGTCAACGGATCACTATACGCCTTAAAGGCCTGTCAGAGTGTGCTCTGGATGAGATGACGTACGACTCCCTGATCTCCGTTCAGCTGCTGCAGAACTACGTCCGCCTGGTGGAACAGTACCATAATGTTATTTTCCATGGGCTGGAGGGAAGCTTTCAGGAGTACATCGCCAACCAGATATCTCATTATATCAAGCACAGACAAGAGGCTCAGGGGATCATCTGCGATGTCATCAGGGTGGAGATAGAGGAGAACCTATCAAAAGAGCAGCTGCTGGAGATCTTCATCAATTGTGGGTTCCTGGTGTCTCTGCATGAAAGCAGCGCTGGTCATTGTGTTGTGGTGGTTCTGGAGGGTCTGGAAAGAGCCCACTCGCTTAGCCACATCCTGGGAGATCTGTGTGAAGCCCTGGAGAACCGAGGATCTGTCTATTCTCTCTCCCTGAACCATGGTCATGATGGGCTGTACTATTTCCGGGAAGGGAGTTTTTTAATGGGAACTCTGGCCAAGCCTCGTCTGCAGGGTGCTGAGCTGCGATTACAGCAGCACTTCCGCTGGGTTCAGCTGCGATGGGACAGCGAGCCCCTCAATGGCATGCTGGGACGGCATATGCGCAGAAAGTTGCTCCACAAGTGCTGGACGTCTGATGATCCTCTACAGAAAGCTCTTTCTTGGGTTTGCTCAGTGTGGCACCAGCTCAATGCCTGTCTTTCACGTCTGGGGACCTCAGAGGCCTTGCTGGGACCCTACATCTTCCTCTCTTGCCCTGTGAATCTGGAACAGACCCAGGCCATACCCAAGTGGTTGGTGAGGCTTTGGAATGCAGTGATTGTTCCACGAGTCGAGGACGCTGTTATATCGAGAGTAACAGCCAAACGCTCTCCCTCGCAGCGACGGTCCCCCAACAGCAAAGCTCTGACCCCGGGCCAGAGAGCAGTGGTCAAAGCTGCTCTCAATATCCTGCTCAATAAAGCTGTTCTGCAAGGTTGCCCACTGCCCAGACCAGAGATAGACAGGCTCTTGCCAGAGCTCCAGGGAGGATGCTTTCCTCTTTCCGCTATTGGCTCCGCCTATAGGAAAGGTGGAAGAAAAGGTGCTTGGAGACGAGCCAATACCAGTCCACGAAAAAAAGGAAGCCCCGCCTCTGGGAGGAGCTCCAGCTGCTCTTTTAGAGAAGTCAGTGGATGTGTGAATATGTATCTGCAGATGGAGATGTCAGCAGTAattgtatgtatgtttatgtgtttCTACAGTGGTTTGTCTCTCTGCTCTGATGATGAGACGGATCTCATTCGAGAACTCCAGAGCATGTGCTCTAGCAAATCAGAGCCAGACATAAGCAAGGTAATACACACTTGTTTGATT

Function

symbol description
cttnbp2 Predicted to be located in cell cortex and dendritic spine. Is expressed in anterior macula. Orthologous to human CTTNBP2 (cortactin binding protein 2).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8134 Predicted to be located in cell cortex and dendritic spine. Is expressed in anterior macula. Orthologous to human CTTNBP2 (cortactin binding protein 2).

Ensembl:

ensembl_id ENSDARG00000040991

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026466 False 5125 mRNA 0.54 23 20726149 20822045
TCONS_00026467 True 4281 mRNA 0.53 19 20730053 20816103

Neighbor

gene id symbol gene type direction distance location
XLOC_013396 asz1 coding downstream 52028 20642378 ~ 20674121 (-)
XLOC_013394 wnt2 coding downstream 89600 20613241 ~ 20636549 (-)
XLOC_013395 BX470130.1 coding downstream 92226 20633789 ~ 20633923 (-)
XLOC_013393 bcl2l13 coding downstream 117849 20581685 ~ 20608300 (-)
XLOC_013392 dennd11 coding downstream 166090 20541316 ~ 20560059 (-)
XLOC_013398 BX470160.1 coding upstream 24145 20846190 ~ 20846313 (-)
XLOC_013399 synm coding upstream 37616 20859661 ~ 20869175 (-)
XLOC_013400 igf1ra coding upstream 59417 20881462 ~ 21047580 (-)
XLOC_013401 anpepa coding upstream 255483 21077528 ~ 21097663 (-)
XLOC_013402 si:dkey-12e7.1 coding upstream 279790 21101835 ~ 21105968 (-)
XLOC_013384 BX323829.1 misc downstream 1183918 19542102 ~ 19542231 (-)
XLOC_013388 NA non-coding downstream 406276 20285665 ~ 20319873 (-)
XLOC_013387 NA non-coding downstream 577052 20140072 ~ 20149097 (-)
XLOC_013386 NA non-coding downstream 841855 19883591 ~ 19884294 (-)
XLOC_013381 CT863714.7 non-coding downstream 1270908 19455144 ~ 19455241 (-)
XLOC_013411 BX548157.1 non-coding upstream 890251 21712296 ~ 21720051 (-)
XLOC_013417 CT573204.2 non-coding upstream 1261727 22083772 ~ 22083886 (-)
XLOC_013420 CR933017.1 non-coding upstream 1728550 22550595 ~ 22552314 (-)
XLOC_013426 BX088710.1 non-coding upstream 1917687 22739732 ~ 22753637 (-)

Expression


Co-expression Network