XLOC_013399 (synm)


Basic Information

Item Value
gene id XLOC_013399
gene name synm
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20859661 ~ 20869175 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026469
ATGTTTCGAATGAGGGAACCGTTTGAAAGCGAGAAGCTCCAGCTGCAAGAGCTCAACCAAAGACTCAGCCACTACCTAATGCGCTCGAAACAGTTGGAACAAGAAAACACCTGTCTGATTAACGAAATAAGCTCAATCAGGCAGAACAGGTCTGGAGAATGGGAAAGCAAGCACATGTCCGAGCTGCGAGAAATGAGGAGACTGGTGGAGCGTTTATCTTTCGAGAAATGCAAAGCGGAGATGGAGCGACAGAAGCTGCGCAATGAACTTCAGGCGCTGCAGGCGATGCGTTCAGATGAAGCCTCGGTCAGCAAAAGCATCGGGACTGAGCTTAAAGGCTGCGAGAGGCAACTTCAGAACGCTATTCAGGGCAACGGTGCTTTGGAGAGTCGTCTCTTTGAGCTGGAAACGGAATACAAGTTTTTGGAAGATGCCCACAGAAAGGAAGTGGCCCACCTGAGGGACCAGGTGCGCTCCAGAACTGTGCGAGTCGTGACTCAAACGCGTCCCGCTCCTCCAGCGGTTACTATGGAGGAGGTGCAGGAGTACGCAAACAACTTCACCGAAAACTGGCAGGGCACCTTGGAGATGTACCGCCTGCAGGTGGAGGAAATCGAAGAGTCGATAAAAGCAGACCACGCGAGGCTGGAGGAGATTCAGAGGGAAAAGAAGGAACACGCTTCGCAGTTCAAGAGGCTGCGTGACGAGATTGAGAAACAAACACAAGTGCAGATGAATCTCGAGGAGCAGCTCGTGAACATGCAAGATCAGTTCAGAGCTGAAATCACTCAGTATCAGGCTATTATTGAGGAACTAGAGTATGAGCGCAGAATGCTGTCCAGCAACATCTCAGATAAGCTGAAGGACCATCAAGATCTATTACAGGTCAAGATGGGTCTCGCTCTGGAAGTGGCAGCATACAGGGCGCTCTTGGAAGAAGAAGGAAGACATGCTAAAATGTGGTCTAATCAGCATTCAAGAGAAAGAATTATAGATATTAAAACACCAGCCCATGTTTACACTCCAAGAGTCTCTGTTAATTCTGCAAGTCGGCCGGATACAAGAAAAAAAGCCTTCACAGGATATGATGTTAAATATATGGAGCCTGTTTCCAGCATGAGATCCTCATCAACATCCAGTCAGTTTCATTCTTACGAACCCTCTAGGATTGTGCCCATCAGTGTATCAAATCGTGCCCAGCAGAGTCCTGATTCTAGAAGGGACATGATTTCATTCACCAAAGCAGCTCAAGCAGCTGCTTCCGGTACCTCAAAACCTGGAGTTTCTTCTGTAGAGGTAAAAAGAGAGGAGATAGATCAGAGATATCTGAGAAAAGAGGTCTCTCAGCACCCTTCAAAAAGCTCACCTGATCTTCCCCCCACTAGAATCGAAAGTACACCAAGCTCAACCATGTCAAAAATAGAGAAACCAAAGTCAGTGAATGTAATATCACCTACTGTGAGCTTGAGCAAGACCATCACAGAAGAAAGCCGAGAGAAAGATGTTAaactgaaagaaaagaaaatggatttCAAACTAGATCAAGACAAATCTGAGGCATCAATAAAAGATAAAAGAGGGGATGTGAAAGAATCAATCGCCAAAGATGTGAGAGAGTCTGAACATGTGGGGCATAAGGTATTTGTAGGTGAGGAGAAAATGTTAGATGCTGTTTCTATGGAGGAAATCATTCAGAAGGTCATGAAACCAGCCGGTTTAGATCCTAAGGTCAGCTCATCCCCTGACTCAAAGGTCACATATCACGTAGAGAAAACAGAACAAGAGGATGGAACCACCAAGACTCAGATTGTCTTACAATCGAAAGTTGAGGAGGAGCTGGACCTGTCTGAAGATTCTGCCCTAGAGGAGCTTCTCAGCCAGGGAGTCAAGAAGGTCACTCTGGAGAACATCAAAGGAACCCCAACGGGAGCCATGATTGAGAACCTGTTGAGTCTTGGCCTGCAAGGTGAGAGTTTGGAAAATAAGTTGGTGAATGTGGAGGTAATCGAGGAACCGGTGGATTCTCAGAGTGATGAGGAGAGTGAAATTGAAATAGAGGAGACTGTGGAGATTAAGTCTAAACAGCCAAGCATCAGTCCCTCATCAATGTCCTTCCAAATCGAGGAGCTAGAGAGTGACCCTAAGACCACAAAACCCTACGAGACTGATTTTGCTAAATCCTCACGTTATGGGAACAGTGGGTCTATGCAGTTTCAGGATGTTTCCAAAGAAGAAAGTCTACCCTACTTCTCACATGGTAAAGACTCACAAGAATACTTCGTCTCCACTCCTGACGAGAACCTGTCAGAGTCCGAGGAAAAAGACAATGAGTCGGAGGATGGCGGAAGGTTTATGTCATATAGCCATTACGGAGTTGTGGATGATCTGTCTGATGAAAGATATTACCAGGAAGATGATCCAAAACGACCCACTGCTGAAGGTCACAGTTACAGAGACTCACCTGATTATGGTGACCGCTCGTTTCTGAGAGACAATATCCAAGACTGCATAATTGAAGAGGAGGTGCACGTTTCTCCCACTCTGCAACAGTCCATAGTGGGGATCCTGAGAGAGGACTCACTAGACCCCGAACAGCAGCTCAGAGGAGCATTAGAGCAAATCCAAGACACTGTTTCTGGAGCCCTCAAGGAAGAGCTGGCATTTTTCACGAAAGGTAGAGAGACTCCAGAGAATGTCTCGGTGGACATCAAAAAAATAGAACAAGTTGCAGACAATGGAACCATGACTATTGTGGCGGAGCTCAATGTGTCCCAGACGTTGGAGGAGTCTGGACTGCTGGAAGAAGCAGAAGATGATCCATCTGAAGAGCAGATCATGGCGGCGCTGAGCTCATCTCATCCAATGCTCCAGCAGGCCATAGGTGGAGCTGCCGGTACAGGATACACCATGAAAATTTCCAAAGAGGAGTTTGAAACGGACGAAGTGCCATGGATGACCACCGATGAAGAGTTCCAACAGTGGAGCTCAACCGATGGGTTTGGCAAGACAGAAAAACACATCAAGCTCGGCCCTACTGAGAGATCTTTTACTTTTCAGATGGATGTGAACAACGGCTCTACTGCATCAGTGAGTGAAGGAGCCATCGAAGTGCAAAGCAGCTCTTCTGAATTCTCACAGACTCAGATGATTGAGCCACACTTAAAGGTCTGTCATGAGAAAAGAGTCGCAACTGTTTATCTTGAAAGCCCCAAAGATGAGTAA

Function

symbol description
synm Predicted to be located in intermediate filament. Orthologous to human SYNM (synemin).

GO:

id name namespace
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-81 Predicted to be located in intermediate filament. Orthologous to human SYNM (synemin).

Ensembl:

ensembl_id ENSDARG00000062350

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026469 True 3222 mRNA 0.47 4 20859661 20869175

Neighbor

gene id symbol gene type direction distance location
XLOC_013398 BX470160.1 coding downstream 13348 20846190 ~ 20846313 (-)
XLOC_013397 cttnbp2 coding downstream 37616 20726149 ~ 20822045 (-)
XLOC_013396 asz1 coding downstream 185540 20642378 ~ 20674121 (-)
XLOC_013394 wnt2 coding downstream 223112 20613241 ~ 20636549 (-)
XLOC_013395 BX470130.1 coding downstream 225738 20633789 ~ 20633923 (-)
XLOC_013400 igf1ra coding upstream 12287 20881462 ~ 21047580 (-)
XLOC_013401 anpepa coding upstream 208353 21077528 ~ 21097663 (-)
XLOC_013402 si:dkey-12e7.1 coding upstream 232660 21101835 ~ 21105968 (-)
XLOC_013403 BX571884.2 coding upstream 295416 21164591 ~ 21170264 (-)
XLOC_013404 si:dkey-12e7.4 coding upstream 302290 21171465 ~ 21177674 (-)
XLOC_013384 BX323829.1 misc downstream 1317430 19542102 ~ 19542231 (-)
XLOC_013388 NA non-coding downstream 539788 20285665 ~ 20319873 (-)
XLOC_013387 NA non-coding downstream 710564 20140072 ~ 20149097 (-)
XLOC_013386 NA non-coding downstream 975367 19883591 ~ 19884294 (-)
XLOC_013411 BX548157.1 non-coding upstream 843121 21712296 ~ 21720051 (-)
XLOC_013417 CT573204.2 non-coding upstream 1214597 22083772 ~ 22083886 (-)
XLOC_013420 CR933017.1 non-coding upstream 1681420 22550595 ~ 22552314 (-)
XLOC_013426 BX088710.1 non-coding upstream 1870557 22739732 ~ 22753637 (-)
XLOC_013427 BX663522.1 non-coding upstream 1990304 22859479 ~ 22862467 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_03715150_03721616 SYNM coding CI01000013 null 3715150 ~ 3721731 (+)