XLOC_013403 (BX571884.2)


Basic Information

Item Value
gene id XLOC_013403
gene name BX571884.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21164591 ~ 21170264 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026475
CAAATATCTAATCTTTCAAGCTCTGGCTATTTGGCTACAAGTCAGTGATACACTGGACATTCGATTTGCATAGTGGAGTAGTAGAAAGCCAACAGTTCTACATATGCCATTGAAACACATCTTGTATTAGTTAAAGGTTCCTGAAGGCAGTGAAGATCAAGCATGTTTAATAAGAGCTGAATGAACAAGTGATCCAACAGGTTTGCCATTTGTGTTTGCTGATCATTTGTCAGGTGATCACTGTCAACTATGTAGGAATATGGATATGCTCCCGTCatagtttatttacaaaatgGAACTAAAGGTGGAAAACTAAAGCTTGAAAAGGGTTGTACATGGCAGAACGACAATATGGTGTTTATGGCTTTGAGTCTTCGACTGCTATTCTCTGAGCAAGTTGAGTATAGTATCTTGGCCATATCAGCTGTGGTTTTCCTTGCAGCCCTTGGCTTTTTGATATGGCAAATTTACCGCTACTGTACACAGTTTCGCGTTTTGCAAAGAGCTGaTGGCCAGCCAGCTAAAAGAGGAGGTTTTCAGAATGGTAAACAAGCTATGAATAAGGTTCAATATGAGGAACTGAGCCACAGACTGTCGCCCGGCTCATCTTGCACTAACCTGGGCAGCAATTTAGACCTGGCAAGCTTGGAGGATCTGGAGGAGGAGCACATCCAGGGATCTCTGCGATTTTCACTGTTCTACGATCAGCTGCAGTCCAAAATGGTGGTGACAGTACTGGATGCCCAGGATCTGGCCGTAAGAGACTTCAGTCACAGTGTGGACCCTTTTGTCTGGGTGCGTTTAATGTGGGCAGAGAGAGAAGATAAAGAGAAGAACTCAATGCGGTGTTTGCTGCACGAATGGCAGACGCGTATTGTTAAAAACAGCTGCTGTCCTGTGTTTGGAGATCAGTTCTCTTGCATTTTAGCTGAGGATGAAGTATCAAGGGTCACTGTTAGATTTGAGGTTAGGGATTTTGATAAATACTCAAGACATGGAGTTCTGGGAGAGACCCGTGCTTCTCTGAACACATTGAAGATCTCTTATCCTCTGGAGTTAAGACAGGATCTGCAAGTACCCAGAAAAGATATAGTTGGCGAGGCCCTTCTTTCTCTTAAATACATGCCTACATCTCAGAGGCTGGAAGTGGGAGTGTTGAAGATCCACACAGTCTGCTATCATAATAAGACTGAAAGAGCTCTCTACGCCAGAACTATTGTGACCTGCAACCAGAGCAGACTTCGCCATCAGAGGACAACTCAGAAGAAACGCAGGGAGGTCACTGTGTTTAATGAGGTGATGACCTTTGTGTTGCCAGATCAACAAATTAAAGAGTGCTCCATAGAGGTGTCTGTTTACGAGATTCAGCCTTCAAAGAAGTCCTCCAAGAACCTGATTGGCCACATCCAagtaaaaaagaacaaaacaggTGAAAATGAGCACTGGAAGCAGATGATGCAATCATTAAGGCAACCAGTCGCAAATTGGCATTTAATCTACATCTGATGCACCTTATTGACGCTTCCCATCTCCCGAGGTGGAAGGTCATACTTCCGACTTTTGTTTGCGCTTTCAGGTTGGTTGGACTGAGGAAACAACATATCAAGAATAAATGGTGCtgagcttttttttgtttttgttttttttttgtatgcaagTTTTAACAGCTCTTGGTTTCCTGGACTCAAAAGATCTCATGTACGCtctctaatatttatttttaacaacaaaTATTACAGAGATGAAACATGTATATTTGTAACACGATAATGACAACGATGATGATTGCAATTAAACCACATCATAATAAATTGTGCTTGATATTACAGTATATTCTGTGGTGGAAATGacaagttataaaaaataaatttgcaatAGTGATAGCGTCTTGCAAAGGTTTTAAAACTGACAGTTCATGCATGTAAACATGTTTACTTTCACTATGTGCTGGctaatttaactaaataaaaaaactgcttgtttGGAACAAGATGCACagtaataacaaaatattttattaaattatattattataccaTTATAAAGTTTACAATTTTAAGTACCAATACAATCCAAGCCTTTCAATTTTCATGAGTCATATGCAAAACTACATCAACACTGT
>TCONS_00026963
TCTGAACACATTGAAGATCTCTTATCCTCTGGAGTTAAGACAGGATCTGCAAGTACCCAGAAAAGTGAGTTTTATCCCAGTGTAGGACATTTAAAAATTATGAGATGATAAGCAGTATACGGTACATATTCTGTGCAGGATATAGTTGGCGAGGCCCTTCTTTCTCTTAAATACATGCCTACATCTCAGAGGCTGGAAGTGGGAGTGTTGAAGATCCACACAGTCTGCTATCATAATAAGACTGAAAGAGCTCTCTACGCCAGAACTATTGTGACCTGCAACCAGAGCAGACTTCGCCATCAGAGGACAACTCAGAAGAAACGCAGGGAGGTCACTGTGTTTAATGAGGTGATGACCTTTGTGTTGCCAGATCAACAAATTAAAGAGTGCTCCATAGAGGTGTCTGTTTACGAGATTCAGCCTTCAAAGAAGTCCTCCAAGAACCTGATTGGCCACATCCAagtaaaaaagaacaaaacaggTGAAAATGAGCACTGGAAGCAGATGATGCAATCATTAAGGCAACCAGTCGCAAATTGGCATTTAATCTACATCTGATGCACCTTATTGACGCTTCCCATCTCCCGAGGTGGAAGGTCATACTTCCGACTTTTGTTTGCGCTTTCAGGTTGGTTGGACTGAGGAAACAACATATCAAGAATAAATGGTGCtgagcttttttttgtttttgttttttttttgtatgcaagTTTTAACAGCTCTTGGTTTCCTGGACTCAAAAGATCTCATGTACGCtctctaatatttatttttaacaacaaaTATTACAGAGATGAAACATGTATATTTGTAACACGATAATGACAACGATGATGATTGCAATTAAACCACATCATAATAAATTGTGCTTGATATTACAGTATATTCTGTGGTGGAAATGacaagttataaaaaataaatttgcaatAGTGATAGCGT
>TCONS_00026962
TCTGAACACATTGAAGATCTCTTATCCTCTGGAGTTAAGACAGGATCTGCAAGTACCCAGAAAAGATATAGTTGGCGAGGCCCTTCTTTCTCTTAAATACATGCCTACATCTCAGAGGCTGGAAGTGGGAGTGTTGAAGATCCACACAGTCTGCTATCATAATAAGACTGAAAGAGCTCTCTACGCCAGAACTATTGTGACCTGCAACCAGAGCAGACTTCGCCATCAGAGGACAACTCAGAAGAAACGCAGGGAGGTCACTGTGTTTAATGAGGTGATGACCTTTGTGTTGCCAGATCAACAAATTAAAGAGTGCTCCATAGAGGTGTCTGTTTACGAGATTCAGCCTTCAAAGAAGTCCTCCAAGAACCTGATTGGCCACATCCAagtaaaaaagaacaaaacaggTGAAAATGAGCACTGGAAGCAGATGATGCAATCATTAAGGCAACCAGTCGCAAATTGGCATTTAATCTACATCTGATGCACCTTATTGACGCTTCCCATCTCCCGAGGTGGAAGGTCATACTTCCGACTTTTGTTTGCGCTTTCAGGTTGGTTGGACTGAGGAAACAACATATCAAGAATAAATGGTGCtgagcttttttttgtttttgttttttttttgtatgcaagTTTTAACAGCTCTTGGTTTCCTGGACTCAAAAGATCTCATGTACGCtctctaatatttatttttaacaacaaaTATTACAGAGATGAAACATGTATATTTGTAACACGATAATGACAACGATGATGATTGCAATTAAACCACATCATAATAAATTGTGCTTGATATTACAGTATATTCTGTGGTGGAAATGacaagttataaaaaataaatttgcaatAGTGATAGCGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000107077

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026475 False 2122 mRNA 0.40 7 21164591 21170264
TCONS_00026963 False 939 lncRNA 0.39 2 21164826 21168118
TCONS_00026962 True 865 lncRNA 0.39 3 21164826 21168118

Neighbor

gene id symbol gene type direction distance location
XLOC_013402 si:dkey-12e7.1 coding downstream 58623 21101835 ~ 21105968 (-)
XLOC_013401 anpepa coding downstream 66928 21077528 ~ 21097663 (-)
XLOC_013400 igf1ra coding downstream 117011 20881462 ~ 21047580 (-)
XLOC_013399 synm coding downstream 295416 20859661 ~ 20869175 (-)
XLOC_013398 BX470160.1 coding downstream 318278 20846190 ~ 20846313 (-)
XLOC_013404 si:dkey-12e7.4 coding upstream 1201 21171465 ~ 21177674 (-)
XLOC_013405 got2a coding upstream 8457 21178721 ~ 21188768 (-)
XLOC_013406 calb2a coding upstream 28498 21198762 ~ 21218851 (-)
XLOC_013407 pnp6 coding upstream 86997 21257261 ~ 21271373 (-)
XLOC_013408 slc38a8a coding upstream 452150 21622414 ~ 21640389 (-)
XLOC_013384 BX323829.1 misc downstream 1622360 19542102 ~ 19542231 (-)
XLOC_013395 BX470130.1 non-coding downstream 530668 20633789 ~ 20633923 (-)
XLOC_013388 NA non-coding downstream 844718 20285665 ~ 20319873 (-)
XLOC_013387 NA non-coding downstream 1015494 20140072 ~ 20149097 (-)
XLOC_013386 NA non-coding downstream 1280297 19883591 ~ 19884294 (-)
XLOC_013411 BX548157.1 non-coding upstream 542032 21712296 ~ 21720051 (-)
XLOC_013417 CT573204.2 non-coding upstream 913508 22083772 ~ 22083886 (-)
XLOC_013420 CR933017.1 non-coding upstream 1380331 22550595 ~ 22552314 (-)
XLOC_013426 BX088710.1 non-coding upstream 1569468 22739732 ~ 22753637 (-)
XLOC_013427 BX663522.1 non-coding upstream 1689215 22859479 ~ 22862467 (-)

Expression


Co-expression Network