XLOC_013404 (si:dkey-12e7.4)


Basic Information

Item Value
gene id XLOC_013404
gene name si:dkey-12e7.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21171465 ~ 21177674 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026476
ACATTTATATAATCTCGTTTACGGCATTAAAACTTAACTCGTGTTCTCGAATAAAGTGTCAAAATGATTAATGCGTTTCAAAACTGCTCAAACTTAATGATCACCGGTGCCAGTCGAGGCCTCGGGCTGCAGATAGTTGAAAGTCTGGTAACGGGAGGCTTCTCTCCCGGGAAGATTATCGCCACTGCGCGGAATCCAAATGGAGCCAAGGAACTACAAAGGTTGGCGGAAGAGTACCAAAACATACACATTATTAAACTGGATGTTATCAGTCAGGAAAGTATAGAAAGAGCTGCAGCTGAGGTGGAAGAGCTAGTTCAAGAGGAGGGTCTCAACTGCCTCATCAACAATGCTGGAATCAATGTTGTGGCAAACCTAGAGACTGTGACCGCAGACCAGATGCTGGAAAACTTCCACACCAACTCTGTTGCCCCTTTGATGATCACCAAGGCCATGCTTCCTCTGCTGAAGCGAGCAGCTGCAAAGGGGACAGGGATGGGGATCCACAGAGCGGCAGTCATCAATGTAACGTCCCTGCTGGGTTCAGTTGAGCTCTACTGGGGTGATCGTGCCGACACTTTCAAATGGTACCCTTACAGAACTTCTAAGAGCGCATTGAACATGGTCACCAGATGCTTGGCAGTGGATCTCGAGGCAGATGGCATCCTGTGTATGGCTCTGCATCCAGGCTGGGTGCGCACTGATATGGGTGGACCTGAAGCACCATTGAGCCCTGAAGAAAGCATTTCCTCTGTGTTGTCTGTGATTGGTGGATTAACCGAAAAGGATCATGGGTCATTTCTACATTATACTGGGGAAACACTTCCCTGGTGAAGCTGTCGATTTTTGTCAATTGCAGCGATAGACGATTTCCAATTGTTTTGCTTTATacatgtttacttatttattaatatacatttttgttcaggttatatttattttatttgctgtaAAATGTTACTCACTGATATTCAGGGTGTGAATGTGATCCGAGTGGATCATGATTGAATAACTTCAATTTTGGCGTTAAAAAAGCTTTGAAATTATCTATTTACTGGTATAATATGAAAGTAGTTTTTCCACTTATTTGTCTTTAAATGCAAAACCAAAGAAACTATTCTGttagattttatttgtattaatagtcACAAGCTGTCTCAAAAATAAAGTACTTATTTTTTTCATAGTTTTGTAATGCTTAAAGTGCAAGCTTTTCGAATTAAAGGTTGTATTGAGgt

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-83 No description available

Ensembl:

ensembl_id ENSDARG00000041073

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026476 True 1238 mRNA 0.42 6 21171465 21177674

Neighbor

gene id symbol gene type direction distance location
XLOC_013403 BX571884.2 coding downstream 1201 21164591 ~ 21170264 (-)
XLOC_013402 si:dkey-12e7.1 coding downstream 65497 21101835 ~ 21105968 (-)
XLOC_013401 anpepa coding downstream 73802 21077528 ~ 21097663 (-)
XLOC_013400 igf1ra coding downstream 123885 20881462 ~ 21047580 (-)
XLOC_013399 synm coding downstream 302290 20859661 ~ 20869175 (-)
XLOC_013405 got2a coding upstream 1047 21178721 ~ 21188768 (-)
XLOC_013406 calb2a coding upstream 21088 21198762 ~ 21218851 (-)
XLOC_013407 pnp6 coding upstream 79587 21257261 ~ 21271373 (-)
XLOC_013408 slc38a8a coding upstream 444740 21622414 ~ 21640389 (-)
XLOC_013409 mbtps1 coding upstream 467635 21645309 ~ 21685055 (-)
XLOC_013384 BX323829.1 misc downstream 1629234 19542102 ~ 19542231 (-)
XLOC_013398 BX470160.1 non-coding downstream 325152 20846190 ~ 20846313 (-)
XLOC_013395 BX470130.1 non-coding downstream 537542 20633789 ~ 20633923 (-)
XLOC_013388 NA non-coding downstream 851592 20285665 ~ 20319873 (-)
XLOC_013387 NA non-coding downstream 1022368 20140072 ~ 20149097 (-)
XLOC_013386 NA non-coding downstream 1287171 19883591 ~ 19884294 (-)
XLOC_013411 BX548157.1 non-coding upstream 534622 21712296 ~ 21720051 (-)
XLOC_013417 CT573204.2 non-coding upstream 906098 22083772 ~ 22083886 (-)
XLOC_013420 CR933017.1 non-coding upstream 1372921 22550595 ~ 22552314 (-)
XLOC_013426 BX088710.1 non-coding upstream 1562058 22739732 ~ 22753637 (-)
XLOC_013427 BX663522.1 non-coding upstream 1681805 22859479 ~ 22862467 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_03501267_03503856 NA coding CI01000013 null 3501267 ~ 3504388 (+)