XLOC_013407 (pnp6)


Basic Information

Item Value
gene id XLOC_013407
gene name pnp6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21257261 ~ 21271373 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026479
AGAGAAGCGTTTTCCCTTGTAGTGAGTGAGGCACAGCTACAGGTCTGTGCTGGTCCTGGCAGGATGACAGTTCTCAAGGCTCTTTAACTGCGGGTCAGTGAGCGGCCCATTCTGACAGAAAATTGGATTAGAACAGCGAGCGCAGTTTAAGAAACGGGTTTAAGACGGACTCCTCCTCCGTCACGCCACCCTTCCCTCGAGACCGTCGGGTGTTTGACCTCTCGCTAAGGTtcttctgtattattattattcctcctCGCGCCAGCAATTTATCACGTTCAGTAATTCGACCAGCCGCTGCGGACATGTCAACATCCAGCGAAtgcagCTTCAGCTATGAGGAGTACAAAGAAACAGCTGACTGGCTGCTTGCTAATACAGATATCAGGCCCAAAGTGGCAATAATCTGTGGTTCGGGACTCGGCGGATTGGCTGACCTGCTGGACAACAAGCAAGTGTTTTCTTATGACAAAATCCCACGCTTTCCACACAGCACAGTGCAAGGACATAAAGGTCAGCTGGTGTTTGGAGAGCTGAAtgggaagcagtgtgtttgcatGCAAGGCCGTTTCCATTTTTATGAGGGCTATAATGTTGCTACGGTCACGTATCCAGTAAGAGTGTTTTTCCTTCTTGGAATTGAGACTTTGATTGTGACCAATGCTGCTGGAGGACTCAATCCTAAATTTAAAGTGGGTGACATCATGGTGATCAAAGACCATATCAATATGCCAGGCTTTGCAGGCCAGAATCCTCTGTGTGGACACAATGAAGAAAGATTTGGAGTGCGCTTTCCCTGCATGTCTGATGCTTATGACCGAGATTTGGCACAGTTGGTCCGGAAAACTGCCAAAGAACTGGGCTGTGACTCTTTCCTCCAAGAGGGCGTTTACTGTATGTTGGCTGGACCGTCCTATGAGACCATTGCAGAATGCAGAGTGCTACAGATGCTTGGTGCGGATGCTGTGGGCATGAGTACCGTTCCAGAAGTGGTGATCGCTCGGCACTGTGGGATACGTGTGTTTGGACTTTCCCTTATTACCAACAAAGTAGTGACCGACTACGACAGCAAGGAACGGGCCAATCATGAAGAAGTCCTGGAAACCACCAGAATGCGAACTGAAGACCTGCAAAGGATAGTCAGCAATGTAGTGAGAAAAATGTAGCAAAAACAataattgacatcaaatactgctGCTGATTTAAACGCACTGATTTTCACCAAGACAGCTTAACAATGTAGAACGCATACAGTATACTACTTAACGCTTCTCATATATCTTATTCAGGGTAACTTTATGAACTTTCCAGTGCCTCAAGACTTTGTAAACACCATGGTACTAACACATCACTATGAGACTAGGTATTAATATCACATGTATACTGTATTATGCATTCGCTTCCTTCCTAAAATGAATGTTAAGAACAAATGAAGTAGCAGCATTACATAACTATCACCATTCCTGTCATTATGTCTTGAAAGAAGAGTTAAAGAACAAACGTGCAGGAAAATGGACAAGCACATACCTACTTTATACAGTGATGCAATCCAACTTAACTGGATAAAAGGGAGCTTCAAAGACTGCAAAATTACCTAGCAACATAATCAAACACTATATTATACAAGTAAATGTTTTATCTTTTTGAAGTTTTATCAAATTGTCTGATGTTTCCAAAGAAATTTACAGACTTTAAATGTTTTCTGCAAGTAATATGTAACAAATTATTAGAgatgttttatagttttttaataATCTAGGAATGTGATGTATTTTACTACGAACTGTATTTTGACAAGCAcaataatatcaaataaaatataaataatg
>TCONS_00026480
GTGACATTAGCATGTGTTTGTGTCTAACAGAGAGATTCTGACAACTACAGTTTTCATAACCAAGTAACCTTCAGTCAGAAATTAAGTTCAATTGTGTGgaattgtatgtgtgtttttgactATTATGCAAAAACCAATACTTTGTTTTCATCTAGCTTCAGCTATGAGGAGTACAAAGAAACAGCTGACTGGCTGCTTGCTAATACAGATATCAGGCCCAAAGTGGCAATAATCTGTGGTTCGGGACTCGGCGGATTGGCTGACCTGCTGGACAACAAGCAAGTGTTTTCTTATGACAAAATCCCACGCTTTCCACACAGCACAGTGCAAGGACATAAAGGTCAGCTGGTGTTTGGAGAGCTGAAtgggaagcagtgtgtttgcatGCAAGGCCGTTTCCATTTTTATGAGGGCTATAATGTTGCTACGGTCACGTATCCAGTAAGAGTGTTTTTCCTTCTTGGAATTGAGACTTTGATTGTGACCAATGC

Function

symbol description
pnp6 Predicted to enable purine-nucleoside phosphorylase activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be active in cytoplasm. Is expressed in pronephros; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in purine nucleoside phosphorylase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human PNP (purine nucleoside phosphorylase).

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0009116 nucleoside metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016763 transferase activity, transferring pentosyl groups molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1800 Predicted to enable purine-nucleoside phosphorylase activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be active in cytoplasm. Is expressed in pronephros; sensory system; and solid lens vesicle. Human ortholog(s) of this gene implicated in purine nucleoside phosphorylase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human PNP (purine nucleoside phosphorylase).

Ensembl:

ensembl_id ENSDARG00000040942

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026479 False 1829 mRNA 0.42 6 21257261 21271373
TCONS_00026480 True 491 mRNA 0.42 3 21263212 21267103

Neighbor

gene id symbol gene type direction distance location
XLOC_013406 calb2a coding downstream 38410 21198762 ~ 21218851 (-)
XLOC_013405 got2a coding downstream 68493 21178721 ~ 21188768 (-)
XLOC_013404 si:dkey-12e7.4 coding downstream 79587 21171465 ~ 21177674 (-)
XLOC_013403 BX571884.2 coding downstream 86997 21164591 ~ 21170264 (-)
XLOC_013402 si:dkey-12e7.1 coding downstream 151293 21101835 ~ 21105968 (-)
XLOC_013408 slc38a8a coding upstream 351041 21622414 ~ 21640389 (-)
XLOC_013409 mbtps1 coding upstream 373936 21645309 ~ 21685055 (-)
XLOC_013410 fan1 coding upstream 414742 21686115 ~ 21725805 (-)
XLOC_013411 BX548157.1 coding upstream 440923 21712296 ~ 21720051 (-)
XLOC_013412 pskh1 coding upstream 456821 21728194 ~ 21748966 (-)
XLOC_013384 BX323829.1 misc downstream 1715030 19542102 ~ 19542231 (-)
XLOC_013398 BX470160.1 non-coding downstream 410948 20846190 ~ 20846313 (-)
XLOC_013395 BX470130.1 non-coding downstream 623338 20633789 ~ 20633923 (-)
XLOC_013388 NA non-coding downstream 937388 20285665 ~ 20319873 (-)
XLOC_013387 NA non-coding downstream 1108164 20140072 ~ 20149097 (-)
XLOC_013386 NA non-coding downstream 1372967 19883591 ~ 19884294 (-)
XLOC_013417 CT573204.2 non-coding upstream 812399 22083772 ~ 22083886 (-)
XLOC_013420 CR933017.1 non-coding upstream 1279222 22550595 ~ 22552314 (-)
XLOC_013426 BX088710.1 non-coding upstream 1468359 22739732 ~ 22753637 (-)
XLOC_013427 BX663522.1 non-coding upstream 1588106 22859479 ~ 22862467 (-)

Expression


Co-expression Network