Item | Value |
---|---|
gene id | XLOC_013410 |
gene name | fan1 |
gene type | coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007129.7 |
NCBI id | CM002902.2 |
chromosome length | 51023478 |
location | 21686115 ~ 21725805 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
symbol | description |
---|---|
fan1 | Predicted to enable flap-structured DNA binding activity; nuclease activity; and ubiquitin-dependent protein binding activity. Predicted to be involved in double-strand break repair via homologous recombination; interstrand cross-link repair; and nucleotide-excision repair, DNA incision. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Is expressed in female organism. Human ortholog(s) of this gene implicated in karyomegalic interstitial nephritis. Orthologous to human FAN1 (FANCD2 and FANCI associated nuclease 1). |
id | name | namespace |
---|---|---|
GO:0036297 | interstrand cross-link repair | biological_process |
GO:0033683 | nucleotide-excision repair, DNA incision | biological_process |
GO:0006974 | cellular response to DNA damage stimulus | biological_process |
GO:0000724 | double-strand break repair via homologous recombination | biological_process |
GO:0006281 | DNA repair | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0008409 | 5'-3' exonuclease activity | molecular_function |
GO:0004518 | nuclease activity | molecular_function |
GO:0004519 | endonuclease activity | molecular_function |
GO:0046872 | metal ion binding | molecular_function |
GO:0004527 | exonuclease activity | molecular_function |
GO:0004528 | phosphodiesterase I activity | molecular_function |
GO:0016787 | hydrolase activity | molecular_function |
GO:0016788 | hydrolase activity, acting on ester bonds | molecular_function |
GO:0017108 | 5'-flap endonuclease activity | molecular_function |
GO:0140036 | ubiquitin-dependent protein binding | molecular_function |
GO:0003676 | nucleic acid binding | molecular_function |
GO:0003677 | DNA binding | molecular_function |
GO:0070336 | flap-structured DNA binding | molecular_function |
id | description |
---|---|
ZDB-GENE-030131-6225 | Predicted to enable flap-structured DNA binding activity; nuclease activity; and ubiquitin-dependent protein binding activity. Predicted to be involved in double-strand break repair via homologous recombination; interstrand cross-link repair; and nucleotide-excision repair, DNA incision. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Is expressed in female organism. Human ortholog(s) of this gene implicated in karyomegalic interstitial nephritis. Orthologous to human FAN1 (FANCD2 and FANCI associated nuclease 1). |
ensembl_id | ENSDARG00000062269 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00026483 | False | 6203 | mRNA | 0.40 | 13 | 21686115 | 21725805 |
TCONS_00026484 | True | 3591 | mRNA | 0.46 | 14 | 21688266 | 21725638 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_013409 | mbtps1 | coding | downstream | 1060 | 21645309 ~ 21685055 (-) |
XLOC_013408 | slc38a8a | coding | downstream | 45726 | 21622414 ~ 21640389 (-) |
XLOC_013407 | pnp6 | coding | downstream | 414742 | 21257261 ~ 21271373 (-) |
XLOC_013406 | calb2a | coding | downstream | 467264 | 21198762 ~ 21218851 (-) |
XLOC_013405 | got2a | coding | downstream | 497347 | 21178721 ~ 21188768 (-) |
XLOC_013412 | pskh1 | coding | upstream | 2389 | 21728194 ~ 21748966 (-) |
XLOC_013413 | nrn1la | coding | upstream | 56269 | 21782074 ~ 21910991 (-) |
XLOC_013414 | nutf2 | coding | upstream | 187880 | 21913685 ~ 21929451 (-) |
XLOC_013415 | tsnaxip1 | coding | upstream | 205936 | 21931741 ~ 21950751 (-) |
XLOC_013416 | pard6a | coding | upstream | 302869 | 22028674 ~ 22094102 (-) |
XLOC_013384 | BX323829.1 | misc | downstream | 2143884 | 19542102 ~ 19542231 (-) |
XLOC_013398 | BX470160.1 | non-coding | downstream | 839802 | 20846190 ~ 20846313 (-) |
XLOC_013395 | BX470130.1 | non-coding | downstream | 1052192 | 20633789 ~ 20633923 (-) |
XLOC_013388 | NA | non-coding | downstream | 1366242 | 20285665 ~ 20319873 (-) |
XLOC_013387 | NA | non-coding | downstream | 1537018 | 20140072 ~ 20149097 (-) |
XLOC_013386 | NA | non-coding | downstream | 1801821 | 19883591 ~ 19884294 (-) |
XLOC_013417 | CT573204.2 | non-coding | upstream | 357967 | 22083772 ~ 22083886 (-) |
XLOC_013420 | CR933017.1 | non-coding | upstream | 824790 | 22550595 ~ 22552314 (-) |
XLOC_013426 | BX088710.1 | non-coding | upstream | 1013927 | 22739732 ~ 22753637 (-) |
XLOC_013427 | BX663522.1 | non-coding | upstream | 1133674 | 22859479 ~ 22862467 (-) |
XLOC_013428 | NA | non-coding | upstream | 1460924 | 23186729 ~ 23195554 (-) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000013_03225714_03236717 | FAN1 | coding | CI01000013 | null | 3225714 ~ 3237045 (+) |