CI01000335_00193513_00197704


Basic Information

Item Value
gene id CI01000335_00193513_00197704
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 191873 ~ 197764 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000335_00193513_00197704.mRNA
CTTTAAAAAGCCTCTCTTAAAAGAATATTCCAGATTCAATACTCGACAAGACTCGAAAAACGTGTAAAGTAATGCACACGTCTATGGGGCAAGGGTACAACACAGTGAATAGACGTTTAAAATATTAACATTATTATAGAAATATTCCATTAAAATTCATTTATAAAGTTTCAAAAGACAGCAGAGTCATTAGAACTGTCTGTCCTCATTTTCCAAGATGTTAACTTACCTAGAGAACTGGTACCAACGTGGAGATTGAGTCATCTGTCCATAACAATCACAGCAGATCTGCTGTTGGAAACAAAGTTCCATATATCCGTTATTACATTACTGACAGCACATTCATATATGGGCCCCCCTGGAGGCCGCCAAATGTGCGATTATTGTTATGATTTGCTTTGGTCACAGTCGGCTAGGTATAATCAAGGCCTGGGGTTTCAGAAAATCAACATTCTCGCTGCCATGCTATGCTACATCAAGTCAATTTGATGACAGGCTGAAACACGGCATGGTGTGTTAACTAGGCCTGTGATGGTCCGGAGTTGGGGTGAACGTGGCAATCACAGAGGTGGTGAATAAGAAACATACATTTCTCCAGGTTATACATACATAAATGCAACAGAGGTCAAATAGTATCAATGCATATGTACTTGCGTGTTTGATTTCAGTTACACTTGTCAAGGCTGTCTCGTTTATTTTATAGAGTCAACTTCATATGGGAAAAGTTAATCTAGAAAAAAGTCCACAAAAGTATGTATGCAAGTTCAAGAAAGTTTGAATGCAAAATTACTTAAATTATATTAAATAGTAAATACAGTTAAAAAAGATAAAGTTAAAAAAGTGCATAGTGATTGACATTTATAGTATGTGGCTGCACATCTTGAAAATCGATTTATCTTTTATTGTCCCTGTGAGTATTGAGTCAATTGACCCAAGTGTCCAATCAGCAGTAAATGTGCATTATTGCAGGAACGAGGCACCTCTTCATCATTCCAGCCTCGACCAAACATCTGACATCCCTTCAGCAGCTGCGAATCATTAACATTTGTTATAGATTCTGTATATCAACAAGGAAAACATTAAATAAAGAGTTCCATATGTTAAAAATGCCATTTCTGTGCTGGACGCTAAATGGCTTTGGGTAATTTAACATGATCTGTTCAAAGAAAGAATCTCGCCCTCCTCCAGTCCTATTGGAGCAGGAGGATTAAAAAAATGTGGGATGGATAGAAAACACACCGTGGAGTGTATGCGCACACACACACACGCACACACTCTCTCACACACACACACACACACACACACAATAACATTAACATAAGTACAATAACATTTACATTGGGAATCACAACCATATTGCAACGTGTTAGATACGGTGCTTGGCACCCTGCAGGCATCCACAGAGGACCTGTTGCGTTCTGCCAGAGCTGCTGGCGGCAGCCCAATGTTGCCTATTAACAGAAAATGCCAACATACGCAAAAAAACAAACAAGCCCCGTCCAGGCGGTGTGACTCTGTACTACATTAAGGCTTCAGTCTGTGACAGTTTGCCGCTAAACTGTTGTAAACACCTCTCACCAGAGCGCGAGGAGCTAACAGCAATCTGTGGCTAAATTAATGAGGGGCTTCCCCCCGCGCACATGGCACCGCGCCAGCGCAGCAACGGAAAAGGAAAATCTCCCATCATGCAAAGCGAAGCTGAGGAAACCCTAACCGTAGAGGACGGAGACTTTGCAGGAGAATGTAACAAATATCATTTGGAGACACCGACCCGCGCAGAGGGCGATTTGTTGTCTGAGTGCCACCGCTTCAGATATGGATTGTTCGGGCACGTAAATGTATGTTCTGCCGGTAAGCTCCTTATTGATACACATGTGCTGAGACCACCCATACCTGGGGCTCATCCCTCTGTCAGACTGCTGGTCGTCCGAGAGGCGGGGGAAAAGACACAGTTCTTCTCTATTCGAAAGCTAATGCCAAATCCCCGGGTCGATGGGTTAATTGGGATGCGCGGTGATTCCTCTGTTGAGCAAACACGAGCTTTGAAGGTGACTAGGAGAAGTGCGTGGCCCCATGATTGCCCCCCGCTTGTCATTTATCATAATTACTCTGAGCAGAAATTAGAACCGGCCCCTGTTCAAATTTTCCATCATGTCTGTTTTCCTTGGACACGTGCACCTCATCATCACCGAACGAATCAGCTGTCAATCATCTCAAAGATTGCTGTCCTCAATCTATAAACCCCCTGAGGTGTGAGAGGGTGAGAGAATGAGACATAGAGATGCATGGTCAGGATTAAA
>TU547841
CAGGTTAAAAACAGCTTTAATTGGGTCCAGAGGATACAACATACCACTCTCTTCAAAGACATAATTGAAATTAAGTTGAGACATCCGTTGCTTGACACAATCACCTCGTTGAAAATGATTGAAGTTGCATTATTGTCAACAGAGGGGCTCGGAAATCTGTGCAACGCCTCATAAGTTTGGAAAGAAAATCAAAGCAACTGAATCAAAGTTTTACAATAACAACAGGAGGCAGCGGCAGTGGCAATATTGTCATCCTCCTGTCAGTCGATGGGTTAATTGGGATGCGCGGTGATTCCTCTGTTGAGCAAACACGAGCTTTGAAGGTGACTAGGAGAAGTGCGTGGCCCCATGATTGCCCCCCGCTTGTCATTTATCATAATTACTCTGAGCAGAAATTAGAACCGGCCCCTGTTCAAATTTTCCATCATGTCTGTTTTCCTTGGACACGTGCACCTCATCATCACCGAACGAATCAGCTGTCAATCATCTCAAAGATTGCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000335_00193513_00197704.mRNA False 2300 mRNA 0.43 4 191873 197764
TU547841 True 502 lncRNA 0.43 1 197190 197691

Neighbor

gene id symbol gene type direction distance location
CI01000335_00149953_00163006 TFEC coding upstream 28334 149953 ~ 163539 (+)
CI01000335_00103583_00132304 NA coding upstream 59444 103472 ~ 132429 (+)
CI01000335_00077557_00081374 CD5L coding upstream 110387 75813 ~ 81486 (+)
CI01000335_00286459_00296460 NA coding downstream 86963 284727 ~ 297256 (+)
CI01000335_00489106_00492720 NA coding downstream 290924 488688 ~ 492973 (+)
CI01000335_00526951_00528066 GPR85.L, GPR85 coding downstream 329187 526951 ~ 537487 (+)
CI01000335_00586957_00597421 TMEM168A coding downstream 389193 586957 ~ 598108 (+)
CI01000335_00681430_00741137 DOCK4B, DOCK4 coding downstream 483666 681430 ~ 741222 (+)
G477410 NA non-coding upstream 883 190784 ~ 190990 (+)
G477409 NA non-coding upstream 2434 189182 ~ 189439 (+)
G477407 NA non-coding upstream 7179 184464 ~ 184694 (+)
G477348 NA non-coding upstream 15415 176221 ~ 176458 (+)
G477347 NA non-coding upstream 16400 175238 ~ 175473 (+)
G477422 NA non-coding downstream 13029 210793 ~ 211595 (+)
G477430 NA non-coding downstream 56257 254021 ~ 254235 (+)
G477431 NA non-coding downstream 75979 273743 ~ 273950 (+)
G477435 NA non-coding downstream 81804 279568 ~ 279783 (+)
G477436 NA non-coding downstream 83160 280924 ~ 281129 (+)
G477502 NA other downstream 351758 549522 ~ 554633 (+)

Expression


Co-expression Network