CI01000335_00286459_00296460


Basic Information

Item Value
gene id CI01000335_00286459_00296460
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 284727 ~ 297256 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000335_00286459_00296460.mRNA
ACATAAAAAGCAAAATTTTGGGGGGAAAAGTACACACAAACCTGCCTAATATGCTGTTGGTCTTCTGCGTGCTGCCAAAACAGCACTGACCCGACTAGGCATAGACTCTACAAGACCCCTGAAGGCGTTCTGTGGTATCTGGCACCAAGACATTGGCAGCAGATTCTTCTAGTCATGTACAGGTATGTTGCGAGTTGGAGCTGCCATGGATCTAACTTGTTGGTCCAGCACATCCCACAGATGCTCAACTGGATTGAGATCTGGGGAATTTGGATGCCAGGGCAACACCTTGAACTCTACATCATGCTCCTCAAACCATTCCTGACAATGTGTGCAGTGTTTCAGGGTGCATTATCCTGCTGAAAGAGGACACTGAAAGTACATCATAAGGGGGTGTACCTGGTCTGCAACAATGTTTAGGTAGGTGACACGTGTCAAATTTATGTCCATGAATGGGCCAGACCCAGGGTTTCCCAGCAGAATATTGCCCAGAGCATCAAACTCCCTCCACCAGCTTGTCGTCGTCCCAAATTGCATTGTGGTGCCATCACTTCCCCAATGGTGCACATGTTCATGGCCATGGTTTGTTGACTGGGAGCAACTCACAAGCCTTGCCATTTCAGAGATTCTCTGACCCAGTCGCCATATAATCAGAAGTATAATCACTGGAAACACTTTTTTACATTAGATTTTTACATTACATACCAGGTGTAAACCGTCTCAGCTGACCACTTGTGTCACAGATTACCAGAGACAAATATTAATACCAGGATAAACAGCCTTGATTATTGGTAAACTACCCTCTTATTAAGATTCTAGGCCAACGATTTTGTCTTACCTAACAACAAGTACAGTAGTAGCGTGTTTTCCGAGTAAACTGAGGGCTAGCCTAGAGAATTCCCATCTGTGTAGATGTACCTGCTGTTATTTATGAGGGCTCTTGTTTAGGTATGCACACCACAGATGCTGGTAATTAATCCAGCGCGCAATTAGATATTGTTTCAATTCACAGCTGAGTGTAATTAACTTCTGCCGTCCTTCCTCTCTGAGCGAGCTGGCACTGGGTTGAATTAGATAGTATAAGCGTGATTTCTAATCTCTAACCTAAGGCAAGAAGTGCAGGACTAATTTCATGTTTTCTTTCAGAAATAATCAATTTCCTTTGAAAGTGTTTCTGAGGCTGATTAGCTCACAGACCGTTTAATTGGCATGTTGTTCAGATCATATAAGGACAGAGGTCACATTTGCAAACGATCTAGAAATGAGAAGTTAGTATTACAATTACTCTGAATACCAAATCCAGGTAGTGATGGGGCGTACTTGTTTCACCAGACTTGTGAGGGCCAAATTTCTCAAATATGACTTCATGAGTTTATGCATTCATTTTGTTTTATATTAAAATGCTTTTTCCTCTTCCAGCATAACACTAAACTGCAAATGGTAACAGTAACTTCTGGACAACTAATAAGCCATTTTTAGATGGATTTCACCATAAAACATAAATATAGGGGATTTGGGGCGCTTTTAAACATTGATTAGTTTAAGAAAATTACTACTTGTATATACTGTACTGTATATGCCAACATATCTTTCAATAAATAATGAAATGTCAATAAATAAATCAATGGCCAATTGATTTATTAAATTTGCATATGATTTATTGACATTATTGAAAGACATTTCGGACATTCTGAAAAACATTTAGGCTAAGATTTAGGTAAGTCTGTTCTGAATGGTAAAGGATAAAGAAAGAAAATCTGTTTTAGTCTCTAACTTTCAGCTTTTGAGTAACTTTACGGCTGCCTTCCATAAGACCTCCCTTTGGGTTGTGTTAATGGGGCCGGTTAAGGTCTTTTCAGTGTATAGACGCGTGGAGCAAAGCTCCATTTATGTTGCTTATGAGCACATCTCGGGTTTTGGGCGAGCTGGGAAGCGGACCACCTTTCACTCTGGCTCTGCTGGGCCGTTCTGCCATATCCTTCACTGGGGTGATGCTTCACGAGTTCGCCATGACCTCCCCACCATTTCCAGCCATCAATCTGAGCCTGAGACTGCCTTCTGCCTTTGTAGATGGGCACATCTTTTTATTCTAAATCCGCTCTCATTACGGTTCCTCTCAGGCGGTCAACCTGAAGCGAAGGCCTGCCCAGCTCTTATTTGCCTAGATTCAGGATGTAGTGGCTACGGCTGGGCTGTCGGCCGGACTTCATCTGAGCATTCATGTCTGGGCAGTGGGTTCGTCGCCTCATTATCAGCTGTCACGTCTGATAGACTCACACGGGAAGATGGATGTAATTTGGGGACTCCGACTGCAGAATTTCAGGTGAAGGATAACTTGATGTATACAGAATGGAAAAGAAGTCCCATTTGCGTGGAAAAGGGTCATGGCCTTATGGTTAGCACATTGCTATGGAGTGCACATGTGGGAGACGCGGGTTCGAATCAGGTTTACATCTGGTCCTATTCCATTCCATCATATCCTGTGCGGGTGGCAGAATATTTCATCCACTTTGGGACAGCTGTGTCTTTTGATGGCCCTGGGAATGGAGCCATTTTAGTAGTTGATGTGTCCATCCGTCGCCGATATCTAATACGCGGTTACGCCACGCGCCGAACATGACAGAAAATCATTAGCCACCATTGGCTGCTAACTGTCACATGAATGATTGAAGAAGCAGTGAAGCGTTCAGTTTTGCGTGGCAGTTAAACGTCTGCCTGAAAGAGCGAGAGCCCAGCGAGACCCATGATGAAGCATCTTGGAAGAAGGCCACACTCGCCCTCCTACATAACGACAGAGAGAACGAGAGCGGGAGGGGAAAGAGCACCTGTGTTACAACCAGCTAAGATCTGACACCGGGGTCAATCGAGCCATATGGAGTCTGTTCTATACCAAAGAACTCTAAATGTCATGGCTTTGCACAACTAGCCGGACACAAAGAGGAAGGCAACACTTTGAGGGCACAGAGGGGAACGGTACCTTCATAAAATTTCAGTAATCCTAGTCCCAAGATGGTTTGAAGGGAGAGGATTTGCCTAGCAGAGCAGTGGACGGGTGCACTGCCTGCAAACTCGAGGAAAGAGTCGCTCTGGCATCGTTCCCCCATGTCTGAGCCTCTATACTGTAATGAAAGGCTGTTTCCTGTCTTTTCCCAATACTGGGCCATGTAGAGATTCTCCAGAGTTCCCCTGAGCCCTATCAGCTCCTCCTGAGAGAGAGAGAGAAACACACACACACACACACATACACACACACACACAATGAGACGGAGAACTCCTCAAGGGATTGACCAGTCTTGTCTGTGCTCACTGACTACAGACGGTGTTATTCCGGCTCCCTCTCGTCTCAGCAATCCGTGTTCATTAAGGTCATTACTGTAAAATGTTTTTCCTTCGTTTCAAAGTGGGAAACACATGAA

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000335_00286459_00296460.mRNA True 3416 mRNA 0.44 7 284727 297256

Neighbor

gene id symbol gene type direction distance location
CI01000335_00193513_00197704 NA coding upstream 86963 191873 ~ 197764 (+)
CI01000335_00149953_00163006 TFEC coding upstream 121188 149953 ~ 163539 (+)
CI01000335_00103583_00132304 NA coding upstream 152298 103472 ~ 132429 (+)
CI01000335_00077557_00081374 CD5L coding upstream 203241 75813 ~ 81486 (+)
CI01000335_00489106_00492720 NA coding downstream 191432 488688 ~ 492973 (+)
CI01000335_00526951_00528066 GPR85.L, GPR85 coding downstream 229695 526951 ~ 537487 (+)
CI01000335_00586957_00597421 TMEM168A coding downstream 289701 586957 ~ 598108 (+)
CI01000335_00681430_00741137 DOCK4B, DOCK4 coding downstream 384174 681430 ~ 741222 (+)
CI01000335_00884515_00888701 NA coding downstream 587082 884338 ~ 888831 (+)
G477436 NA non-coding upstream 3598 280924 ~ 281129 (+)
G477435 NA non-coding upstream 4944 279568 ~ 279783 (+)
G477431 NA non-coding upstream 10777 273743 ~ 273950 (+)
G477430 NA non-coding upstream 30492 254021 ~ 254235 (+)
G477422 NA non-coding upstream 73132 210793 ~ 211595 (+)
G477451 NA non-coding downstream 21110 318366 ~ 318596 (+)
G477453 NA non-coding downstream 23599 320855 ~ 321097 (+)
G477454 NA non-coding downstream 24412 321668 ~ 321907 (+)
G477456 NA non-coding downstream 27506 324762 ~ 324963 (+)
G477457 NA non-coding downstream 27869 325125 ~ 325439 (+)
G477502 NA other downstream 252266 549522 ~ 554633 (+)

Expression


Co-expression Network