CI01000335_00489106_00492720


Basic Information

Item Value
gene id CI01000335_00489106_00492720
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 488688 ~ 492973 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000335_00489106_00492720.mRNA
TTTTAAATAGCAATAAACCAATATACAAAACCACAAGCATCTGAAAAACATAGTTACTGTAATATTACCCTTTGAGTCAACTTCCCATGTGACAACTAGACCCGGTCTCTTCTACATTTCCAAACAGAAGCATCATGTTGTTTCGGTACAGATACACATATATAATTCATAAGCGTTTATCGAAGTTATCTCGAGGTTCAGGAGAGTTCAACAGACGACATGGACACATCAAAGTGTCCCATGTCTACCAGACTTTAGTGACCAGGAAGACAAGCATAGTTTGCAGCTATTTTTAAGCCTGGCAACCACACAATGTTCAGCTGCAACCTGATGCTCTGTGCCAAGTCACGTTGTGAGTGAGTGTTTCAGGCGGTTAGTGCTGTTCTGCCTGACTTTACCCATTCAGCATTACCCAGGCATGTCTGTGGAAGAGCTTGTACCCTCCATGGTCTCCTGCAACATGGAGCCTCCCATCTGCAGGGACTGGATAATGAAAAACAAAGAGAAAAACATAAAATTAGAGAAGATGGTAGACCAGATATCAGATGGAAGCTCCGCAGATGAATCCGAGGAGGTGGAACCCGAGCCCCCACCTGTAGCCGTGCGAAGAAAGGTGTCGTTTGCGGATGCCTTTGGTCTGGACCTGGTTTCCGTGAAGGAGTACGACAGCCGGTATTCATCCAGGTCGGAGGCGGACGGTAGAGAGGGTGAGGAATATTACATCTCATGCCTCTTCACCGTCCCAGCCTTAAACCAGGACATGGAGGTGAGACTTCAGCAGCAGAAACTGGAGCTGGAGCGCATTGAGCTGCTCCCTGGATCCACCACGATCCGGGGAATCGTCCGTGTTCTTAACCTCTGCTTCCACAAGGCCGTCTACATTCGCGCCTCATTGGATGGCTGGCAGAGTCACTTCGACCTGCTGGCGGAGTACGTGCCTGGGTCCAGCGATGGCGAGACGGACTGCTTCTCCTTCCATCTCGTGTTGACGCCTCCATTCCCGGTCGAAGGGATGGTATGTTTGAACATATGGCTGGTGTGTGTGATTGATAACCTGCTGTATATTTACAGTAAAACGATCTACACAGAGGCGACACCAGCAGAGGCGAGCAGGGAGATCTCAGAGCAAGTCACACCCAAAACAAAGGAAGAAGCAAATAACACATCCTGCAAATCCCTTAAGGACTGCTGCAAAACTCTGGTGGATCGTCGTAGGAAACGTCAAGCTGCTCGTTTGGCGCATGTGCAAGACTACTATGTTCAAAAAGCAATGGAAACCCAGATTAGATGTAATTCCAACACAGGTGAAAGTACCACGTCCATCCCAAGGCTAAGTATACCAAGTAGAACTGATTTGCCGGTTGTCCACAGACAACAAGGATGCGGTATGGACACACCACCTATACTAATGTACCACCAGATCCCTTTACTTTCTCTGGATTGGGGCAGTAAAACAATAACCCCTCCCCATGCAAACCCCCCTGATGCCTACAATGAAACAAGCTGGCAAGTTGAAGATCACCTAGCCAAATCGACTCATGACGTCTGGGAAGCTTTTCTTAAAGGCACTGACACAACAAACACTCACAATGATATGCAGGAACAAATGTGTGGTCCTTCAGAGTCACTTGGCCAATCCGAAGTTTTAGCTTCAAGGGATAAAGTTGTAGTTCCACTGGAGAGCAAGGGAGCTGAGAAAGACAACAATCATGGGTCTGGTGACAGCTCAGTAATGGAAACTGTAAAATGTGATCCTACAGAGCAATCAAAGAGTTCTTCTAGAGATCAGGTTGTGGATTACCAGCTAGTGAAAGAGCCAAGAGTCACTACCGTACCATGTTCTGCTCTGGGATCAGAGCCAGAGAGAGTGGGAAGAGAGTTAAAGGCATCTCGTGACCGCCAAGCCCCACATCATGAGCACACAAGTGGATCTTTGAGTCAAGACACGACCAAGCCAAGCCCAGGGGACGAAACTCGAACCGCACATGACACAGAGACTCAGAATTCAGAAGCTAGAGATGGAATCTCACCTGAAGAATGCACAGGCAGCTTCGACACCTCAAAGGTTAAAGAAAACACACACAGAGCGGTCAAAGACACCCTGACATTTACAGGTATCAGGGACGTGTCGCTCACAAATAGACAGGCCGAGGGATCTTCTTCAGAAAGGAAGGATATAAATAAAGACGATAGCGAGGAGCAGGTGGAAATGAGGGATTTTTATCGAGAAGTACATGAAGAGGACACGGAAAGCAGTAGAAAAGGACAAGATGAAACAACTACGGATCACAGCGCAGAAATACAGAGTGTTTCATGGTGCAAGAGCGAGGCGTTTAATGAGAGCGAATTATGCACGTCGAACAAGAATCTTAACAAAGACAATTCAGAGCTACTGAAAAACGAAGAGAGGCCGTTTGAGGCAAACGAAGGACTTAAAATGAAGGAGCAACTGAATGAGACAACTATAGAAGCTCCTAGCGCTGAAGAGGATGAAATGCATTCAGAAACCAAACGAGAGCTTGTAGAGGACTCCCGAGCAGTGGGTGACAACTGCACAGATGGAGAAGAGAGAGAGTTTAAGTTACTCAAGGCAAGTCACCATCCAACATTTAGCACTGACCTATCCAATCACCTTCTTCAAACAACATCTGCAAAGGAAAGTGAGGTCACTTCTTCAGAAGGAGACTTTGAGCTTGGGAAGACTCTTAGAAACTTTCAAGAACCCCAGCGACTGAACAGAGAGGATGAACCCCCCACGCCATTACCCAACATTCACCTGTCCTGGGTGGGCGGCAACAGCAGCAGACTGTTTTCATGGTGGAAGGAGTTCTGCTCGATGGTTTACATGGCCAAGGCTCTTGTGTGTGCTGTTCTGTTTGTGATCTTCATAATGGCGTATCTGTACGACCTGCCGACCTGCTTGGCCCTCTATCTGTTTTCTCTGTGCTGGTGGTGCAGCCAGGGCATGAAACAGCGTCTGGATGGGGCTGTTGATGTGGACTGAGACCAGGCAGGAAGTTCTTGAACGTTTCGGAGGACGTTCTTGTCAAGTGATGTGATGTTTTTTAACGAAAAGTGACATGAAGTGATTCTACGGACCCAACATCACTTGACAAAACTAGATTTAGGAGGCATTTTTGTTCTTGTTTCTTTCTTGTCACTTGTGTTTACATTAAAAGTTCAATTTAAAGCAGGAGTCTTTCAATATAATACTAAACTCAAACTGCTAGTGGATGAACTGCTTATCCAATTATGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000335_00489106_00492720.mRNA True 3257 mRNA 0.47 4 488688 492973

Neighbor

gene id symbol gene type direction distance location
CI01000335_00286459_00296460 NA coding upstream 191432 284727 ~ 297256 (+)
CI01000335_00193513_00197704 NA coding upstream 290924 191873 ~ 197764 (+)
CI01000335_00149953_00163006 TFEC coding upstream 325149 149953 ~ 163539 (+)
CI01000335_00103583_00132304 NA coding upstream 356259 103472 ~ 132429 (+)
CI01000335_00077557_00081374 CD5L coding upstream 407202 75813 ~ 81486 (+)
CI01000335_00526951_00528066 GPR85.L, GPR85 coding downstream 33978 526951 ~ 537487 (+)
CI01000335_00586957_00597421 TMEM168A coding downstream 93984 586957 ~ 598108 (+)
CI01000335_00681430_00741137 DOCK4B, DOCK4 coding downstream 188457 681430 ~ 741222 (+)
CI01000335_00884515_00888701 NA coding downstream 391365 884338 ~ 888831 (+)
CI01000335_00930276_00934328 NA coding downstream 437303 930276 ~ 936380 (+)
G477523 NA non-coding upstream 82407 405053 ~ 406281 (+)
G477441 NA non-coding upstream 95562 327884 ~ 393126 (+)
G477458 NA non-coding upstream 162608 325859 ~ 326080 (+)
G477457 NA non-coding upstream 163249 325125 ~ 325439 (+)
G477456 NA non-coding upstream 163725 324762 ~ 324963 (+)
G477489 NA non-coding downstream 30741 523714 ~ 526896 (+)
G477505 NA non-coding downstream 62275 555248 ~ 612384 (+)
G477588 NA non-coding downstream 128991 621964 ~ 622163 (+)
G477589 NA non-coding downstream 129767 622740 ~ 623214 (+)
G477502 NA other downstream 56549 549522 ~ 554633 (+)

Expression


Co-expression Network