CI01000335_00988268_00990978


Basic Information

Item Value
gene id CI01000335_00988268_00990978
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 988268 ~ 991337 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000335_00988268_00990978.mRNA
AAAAAGGCCAAATCCAAGTTCTCTGCAACACGCAGACTTCTGCTAAAGAGCAAACTGCTGAGAAAGGCAGAAAGCTTGCTGGTGAAAGAAAAAGAGCAGAAAGATTTGGAGCGAGAAAACACCCTGAGGGAGAGAGCGCCGCCCCTCAACCTCTCCGGCCTGTCTATCCAAGAACTGCAGGAGCTTTGTAGAGATTTGCACCACAAGATTGACGTTGTGGATGAAGCGCGATATGACCTTAATATAAAAGTTGCCAGAAATGATGCAGAGATTCTCTCATTAACCCAGAAGATCTATGAACTGAAGGGAAAAATGAAGCGACCGAACCTTAAAAGGGTGAAGAAGTCGGCAGACGCCATGCTGGGATCGCTGGACTCCAGAGTCATGAAAGCTGACTTCAAAGCGAACCTCAAAACAGTTAAAAAAGAAGAAGAAAAGAAGGAGGAGGTCACGGACTGGAGGAAAAACGTGGAGGCCATGTCAGGCATGGAAGGCAGAAAGAAGCTTTTCAACGCCGGACAGTAGCCGAAAAAAGGCTGCGAAGGATAAAGGGGCATCTTGACACAAAGCTCATGTTGTTTGTTTGAATTTTAATCAACATTATTTTATGGTAAATTATTCATTTATTTGGTCAGCCAGCTGTGGCTTGCACGCGATATTAAATTGTGATTTGCTGCGATTAAAATGTGCGAGCACTGTCCGTAGAGAGGGATTCGATAATAGAACAACCTCATATTCATATCATATCATATCAACTGTGTAAATATTTGCTTCGTATTCTGTGTTGATTGAAACCAATAAGGCTACTGTTTACCCTTGGTTGAAGAGCATGATTATTTTATTACCTGTTTGTAGTTTACAAACAGAAAATAGTTTAATTTTTA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0060048 cardiac muscle contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000335_00988268_00990978.mRNA True 884 mRNA 0.42 5 988268 991337

Neighbor

gene id symbol gene type direction distance location
CI01000335_00930276_00934328 NA coding upstream 51888 930276 ~ 936380 (+)
CI01000335_00884515_00888701 NA coding upstream 99437 884338 ~ 888831 (+)
CI01000335_00681430_00741137 DOCK4B, DOCK4 coding upstream 247046 681430 ~ 741222 (+)
CI01000335_00586957_00597421 TMEM168A coding upstream 390160 586957 ~ 598108 (+)
CI01000335_00526951_00528066 GPR85.L, GPR85 coding upstream 458610 526951 ~ 537487 (+)
CI01000335_01029328_01043603 NA coding downstream 37991 1029328 ~ 1043603 (+)
CI01000335_01055918_01061590 TNNT2D, TNNT2E coding downstream 64581 1055918 ~ 1061716 (+)
CI01000335_01109924_01114152 ELK3 coding downstream 118587 1109924 ~ 1114152 (+)
G477711 NA non-coding upstream 14066 973917 ~ 974202 (+)
G477706 NA non-coding upstream 21132 966724 ~ 967136 (+)
G477703 NA non-coding upstream 27332 960694 ~ 960936 (+)
G477702 NA non-coding upstream 27693 960239 ~ 960575 (+)
G477681 NA non-coding upstream 32753 915078 ~ 955515 (+)
G477714 NA non-coding downstream 80240 1071577 ~ 1074461 (+)
G477504 NA non-coding downstream 84930 1076267 ~ 1078026 (+)
G477496 NA non-coding downstream 91078 1082415 ~ 1083264 (+)
G477517 NA non-coding downstream 134666 1126003 ~ 1129011 (+)
G477502 NA other upstream 433635 549522 ~ 554633 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G33150 NA non-coding CI01000004 null 14164219 ~ 14201867 (+)
bowfin (Amia calva) G30049 NA non-coding CM030123.1 CM030123.1 50251710 ~ 50251922 (-)
tiger barb (Puntius tetrazona) tnni4a zgc:101560,LOC107725970,LOC107584059,LOC107658770,LOC107656258,LOC107581287 misc NC_056702.1 CM032071.1 2091351 ~ 2097801 (-)