G477288


Basic Information

Item Value
gene id G477288
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 26180 ~ 26727 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU547680
TCAGAGATGCTGGCTTTTGAACTGAACGCTGATAACACGCTGGAAGGTCTCTTGCCTCTTTAGCCCGGAGGACACAGTGTCCGTGATTTCCAACAAGAATGCCAATTTTGGACTCATCTGACCATAGAACACTTTTTCAGTGGTTTTTGGAAGTAGTCCTGGGCCCATTTAGTAATGCCATTGACACAATCATGCTGATAAGTGAAGCAGCGTTGTCTGAGGGCCCGAAGACCACAGGCATCCAATAAAGGTATTTGGCCTTGTCCCTTACGCACAGTGATTTCTCCAGTTTCTCTGAATCTTTTGATGATGTTATGCACTGTAGATGATGAGACTTGCAAAGCCTTTGCAATTTGATGTTGAGGAACATTGTTTTTAAAGTATTCCACAATCTTTTTATGCACTCTTTCACAGCTCTGCCCATCTTTACTTCTGAGAGACTCTGCCTCTCTAAGACCTGATATCAATTAACTTAATTAGTTGCTAGATGTTCTCCCAGCTGAATCTTTTCATAATTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU547680 True 518 lncRNA 0.42 2 26180 26727

Neighbor

gene id symbol gene type direction distance location
CI01000335_00077557_00081374 CD5L coding downstream 49086 75813 ~ 81486 (+)
CI01000335_00103583_00132304 NA coding downstream 76745 103472 ~ 132429 (+)
CI01000335_00149953_00163006 TFEC coding downstream 123226 149953 ~ 163539 (+)
CI01000335_00193513_00197704 NA coding downstream 165146 191873 ~ 197764 (+)
CI01000335_00286459_00296460 NA coding downstream 258000 284727 ~ 297256 (+)
G477276 NA non-coding upstream 6548 18228 ~ 19632 (+)
G477300 NA non-coding downstream 45439 72166 ~ 145821 (+)
G477346 NA non-coding downstream 147675 174402 ~ 174618 (+)
G477347 NA non-coding downstream 148511 175238 ~ 175473 (+)
G477348 NA non-coding downstream 149494 176221 ~ 176458 (+)
G477502 NA other downstream 522795 549522 ~ 554633 (+)

Expression


Co-expression Network