Fish Transcriptome and Expression Database

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economic fish

G477407

Basic Information

Item	Value
gene id	G477407
gene name	NA
gene type	non-coding
species	grasscarp (Ctenopharyngodon idella)
category of species	economic fish

Chromosome Information

Item	Value
chromosome id	CI01000335
NCBI id	null
chromosome length	1176510
location	184464 ~ 184694 (+)
genome version	v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU547833
GCACCCCCTACCATACAACAATGAAAACACAGAATGAAGGAAAATTCTGTCAATGGCAGAGAAAATTTGTCTAATAAATGACGGAAAATTCCTTCAATAATGAGGAAAGGCTTAAAATGTACACTCTTTATCTCCTGGGAAATGGACCAAAAATATTGATGACTCATCCTGCACTACACAGATTTGTGTCCAATCAAATTACTCCTAAAACTTGACTAAATTTGTCTTAAG

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU547833	True	231	lncRNA	0.35	1	184464	184694

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
CI01000335_00149953_00163006	TFEC	coding	upstream	20925	149953 ~ 163539 (+)
CI01000335_00103583_00132304	NA	coding	upstream	52035	103472 ~ 132429 (+)
CI01000335_00077557_00081374	CD5L	coding	upstream	102978	75813 ~ 81486 (+)
CI01000335_00193513_00197704	NA	coding	downstream	7179	191873 ~ 197764 (+)
CI01000335_00286459_00296460	NA	coding	downstream	100033	284727 ~ 297256 (+)
CI01000335_00489106_00492720	NA	coding	downstream	303994	488688 ~ 492973 (+)
CI01000335_00526951_00528066	GPR85.L, GPR85	coding	downstream	342257	526951 ~ 537487 (+)
CI01000335_00586957_00597421	TMEM168A	coding	downstream	402263	586957 ~ 598108 (+)
G477348	NA	non-coding	upstream	8006	176221 ~ 176458 (+)
G477347	NA	non-coding	upstream	8991	175238 ~ 175473 (+)
G477346	NA	non-coding	upstream	9846	174402 ~ 174618 (+)
G477300	NA	non-coding	upstream	38643	72166 ~ 145821 (+)
G477409	NA	non-coding	downstream	4488	189182 ~ 189439 (+)
G477410	NA	non-coding	downstream	6090	190784 ~ 190990 (+)
G477422	NA	non-coding	downstream	26099	210793 ~ 211595 (+)
G477430	NA	non-coding	downstream	69327	254021 ~ 254235 (+)
G477502	NA	other	downstream	364828	549522 ~ 554633 (+)

Expression

Co-expression Network