G477422


Basic Information

Item Value
gene id G477422
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 210793 ~ 211595 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU547849
CGTACATCTGTGTTGTATAAATATATGATCAGCTCTCCTCTCTAAAATGGTAGTCTAGTGCAAAAATAAGCTGGTGAATTTCTAGATTTTTGGGGGTTCCACTTAAATCTTTGAACATGAACAATTGAAAATGGCCTAAAACATTCAAACATGTAGAATTGATGCAGAACTTGTTGCATGTATTATAACTGAATAAAGCAACACAACTTCTGGTTCATGTAGGATTGTAACCTCCTTAGATACTGTATTTGTTGATCAATTCTGCAGATCGGAAGACTTAACTTCTGACTAACTTCTCTTTCTTCCTTTTGCTCTTTCTTTCTCTTCTTTCTGCTTTCTTTTTTGTTTTCCTCTCTTTTTTGTTATTCATCCTTTCCTTCCTTACATTTTTTCATTATTTTTTCTTTCTCTCTTTCTTTTCTCACCTTTCGTTTATAGTTTCTTTCTTTATACTGTTCTTTTATCCTCTTATTTTTCTTTTTCTCTACCTTTCATTCCTCCCTTTTCCCTATTTTTTTCTATTCTCATTCTGTTCTTTTAGTCTTTTTCTATTTTTTCTTTTTTCTTGTTCTTTCTTTCTCTCAGTCTTTTCACATTATTTCCTTACATTTTTTGTTCCTTTTATTGCTTTCTTTTTATTTAATTTTTTTTTTATCATTTATCATTTATCATCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCACCAGGATGAAAGTGCAAACACTAAGTGAGATAGAGGATGTCACTTCTTCAACATAAAACTCCATGCAAATCTGCATTAACATTTATGACTGA
>TU547852
TCTGGTTCATGTAGGATTGTAACCTCCTTAGATACTGTATTTGTTGATCAATTCTGCAGATCGGAAGACTTAACTTCTGACTAACTTCTCTTTCTTCCTTTTGCTCTTTCTTTCTCTTCTTTCTGCTTTCTTTTTTGTTTTCCTCTCTTTTTTGTTATTCATCCTTTCCTTCCTTACATTTTTTCATTATTTTTTCTTTCTCTCTTTCTTTTCTCACCTTTCGTTTATAGTTTCTTTCTTTATACTGTTCTTTTATCCTCTTATTTTTCTTTTTCTCTACCTTTCATTCCTCCCTTTTCCCTATTTTTTTCTATTCTCATTCTGTTCTTTTAGTCTTTTTCTATTTTTTCTTTTTTCTTGTTCTTTCTTTCTCTCAGTCTTTTCACATTATTTCCTTACATTTTTTGTTCCTTTTATTGCTTTCTTTTTATTTAATTTTTTTTTTATCATTTATCATTTATCATCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCACCAGGATGAAAGTGCAAACACTAAGTGAGATAGAGGATGTCACTTCTTCAACATAAAACTCCATGCAAATCTGCATTAACATTTATGACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU547849 False 803 lncRNA 0.30 1 210793 211595
TU547852 True 595 lncRNA 0.29 1 211001 211595

Neighbor

gene id symbol gene type direction distance location
CI01000335_00193513_00197704 NA coding upstream 13029 191873 ~ 197764 (+)
CI01000335_00149953_00163006 TFEC coding upstream 47254 149953 ~ 163539 (+)
CI01000335_00103583_00132304 NA coding upstream 78364 103472 ~ 132429 (+)
CI01000335_00077557_00081374 CD5L coding upstream 129307 75813 ~ 81486 (+)
CI01000335_00286459_00296460 NA coding downstream 73132 284727 ~ 297256 (+)
CI01000335_00489106_00492720 NA coding downstream 277093 488688 ~ 492973 (+)
CI01000335_00526951_00528066 GPR85.L, GPR85 coding downstream 315356 526951 ~ 537487 (+)
CI01000335_00586957_00597421 TMEM168A coding downstream 375362 586957 ~ 598108 (+)
CI01000335_00681430_00741137 DOCK4B, DOCK4 coding downstream 469835 681430 ~ 741222 (+)
G477410 NA non-coding upstream 19803 190784 ~ 190990 (+)
G477409 NA non-coding upstream 21354 189182 ~ 189439 (+)
G477407 NA non-coding upstream 26099 184464 ~ 184694 (+)
G477348 NA non-coding upstream 34335 176221 ~ 176458 (+)
G477430 NA non-coding downstream 42426 254021 ~ 254235 (+)
G477431 NA non-coding downstream 62148 273743 ~ 273950 (+)
G477435 NA non-coding downstream 67973 279568 ~ 279783 (+)
G477436 NA non-coding downstream 69329 280924 ~ 281129 (+)
G477438 NA non-coding downstream 79212 290807 ~ 291031 (+)
G477502 NA other downstream 337927 549522 ~ 554633 (+)

Expression


Co-expression Network