XLOC_013414 (nutf2)


Basic Information

Item Value
gene id XLOC_013414
gene name nutf2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21913685 ~ 21929451 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026495
GCAGTGTGTAAGAGCAGTGCGCATGCTCACACTGAAGAGGCCGCTCAACTTCTGTTCTCCGCGCGCTGGATTCGCCATAACTGGAACCGGGGATTCGGTTTAGGGCTCACGGAGTGCCTGTAGCAGGGTGAATCAGAATGGGAGACAAGCCGATTTGGGAACAAATAGGATCCAGCTTTGTGCAACATTACTATCAACTGTTTGACACAGACAGGACTCAACTTGGATCAATATATATTGATGCATCATGCCTTACGTGGGAGGGTCAGCAATTCCAGGGAAAAGCGGCAATTGTCGAAAAGCTTTCCAGCCTGCCCTTCACAAAAATAGCTCACAGCATAACAGCACAAGACCACCAGCCCACCCCTGATAGCTGCATATTGAGTATGGTAGTAGGCCAACTAAAAGCAGACGATGACCCCATTATGGGATTCCATCAGAGCTTCATCCTGAAGAACATTAACGAGGCGTGGGTTTGCACCAATGACATGTTCCGCCTGGCGCTGCACAATTTCGGTTAAAACGCTCCATGGCTATCAGGAGGGAAGGTGGAGGATGGGGGTTCTGCCCTGATGACGCCCGAACCTGTCAATCGGCCCTTCATTCATCACACTCAAGAGAAACGGCACCGGATTACAGCAGTCAATCACAGAAAACATGCAGGCATATACAGTACTGCCTCTACTCCAGAAAAGACATGTTTCTTTGCTGAAAGCCCACACAGCCATCAAACGGACCCCCTTTTCCTTCGCCCACCTGCATGATGATGGAGAGCTTAAGTACCAGAGGACGCCCTGACCAGGACAGAAACCTATTAACCTAACCTCGGCTGTTTGATATTTACATTTTAGTTGCAGATTTGGACTTTTTTGAAATAACAACCGTCTTACTGTCTCTCTTTGCTTTAGTACAGAGTGTGTTATCAGCTTGTTTTAAGAATATCCTCCTGGAAAGTttctctgtttttgttttcgccCCACATGAAAAATTGGAGTCTCCATACAATGTGATGTCAGGTTGCTCTAGCTATCCAAAGAACAGCATCCTAATTTCCCCTTTCCCCTCAGACCAGTGTGCTTCCCACTTTCTGCTCACTGCTCTCTGTGACAATAATTACCAAGCCACGATACACAATAAAACCTTTGACTTTTTCTTAACAACGTCA
>TCONS_00026496
CTCACACTGAAGAGGCCGCTCAACTTCTGTTCTCCGCGCGCTGGATTCGCCATAACTGGAACCGGGGATTCGGTTTAGGGCTCACGGAGTGCCTGTAGCAGGGTGAATCAGAATGGGAGACAAGCCGATTTGGGAACAAATAGGATCCAGCTTTGTGCAACATTACTATCAACTGTTTGACACAGACAGGACTCAACTTGGATCAATATATATTGATGCATCATGCCTTACGTGGGAGGGTCAGCAATTCCAGGGAAAAGCGGCAATTGTCGAAAAGCTTTCCAGCCTGCCCTTCACAAAAATAGCTCACAGCATAACAGCACAAGACCACCAGCCCACCCCTGATAGCTGCATATTGAGTATGGTAGTAGGCCAACTAAAAGCGGATGATGACCAGGTGCTGGGCTTCCACCAGACCTTTCTGTTGAAATGCATCAACACAGCCTGGGTTTGCAGCAATGAAGTCTTCAGGCTTGCCCTGCACAACCTTTGAGCTCAAAGACTCTCGGTGGTCACATGGCCTTTCCTTCTTCTCTTAAAGTCTGCAGACGATGACCCCATTATGGGATTCCATCAGAGCTTCATCCTGAAGAACATTAACGAGGCGTGGGTTTGCACCAATGACATGTTCCGCCTGGCGCTGCACAATTTCGGTTAAAACGCTCCATGGCTATCAGGAGGGAAGGTGGAGGATGGGGGTTCTGCCCTGATGACGCCCGAACCTGTCAATCGGCCCTTCATTCATCACACTCAAGAGAAACGGCACCGGATTACAGCAGTCAATCACAGAAAACATGCAGGCATATACAGTACTGCCTCTACTCCAGAAAAGACATGTTTCTTTGCTGAAAGCCCACACAGCCATCAAACGGACCCCCTTTTCCTTCGCCCACCTGCATGATGATGGAGAGCTTAAGTACCAGAGGACGCCCTGACCAGGACAGAAACCTATTAACCTAACCTCGGCTGTTTGATATTTACATTTTAGTTGC

Function

symbol description
nutf2 Predicted to be involved in protein import into nucleus. Predicted to be part of nuclear pore central transport channel. Human ortholog(s) of this gene implicated in diabetic retinopathy. Orthologous to human NUTF2 (nuclear transport factor 2).

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006913 nucleocytoplasmic transport biological_process
GO:0044613 nuclear pore central transport channel cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-77 Predicted to be involved in protein import into nucleus. Predicted to be part of nuclear pore central transport channel. Human ortholog(s) of this gene implicated in diabetic retinopathy. Orthologous to human NUTF2 (nuclear transport factor 2).

Ensembl:

ensembl_id ENSDARG00000056531

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026495 False 1165 mRNA 0.47 5 21913685 21929451
TCONS_00026496 True 992 mRNA 0.49 6 21913995 21929426

Neighbor

gene id symbol gene type direction distance location
XLOC_013413 nrn1la coding downstream 2694 21782074 ~ 21910991 (-)
XLOC_013412 pskh1 coding downstream 164719 21728194 ~ 21748966 (-)
XLOC_013410 fan1 coding downstream 187880 21686115 ~ 21725805 (-)
XLOC_013411 BX548157.1 coding downstream 193634 21712296 ~ 21720051 (-)
XLOC_013409 mbtps1 coding downstream 228630 21645309 ~ 21685055 (-)
XLOC_013415 tsnaxip1 coding upstream 2290 21931741 ~ 21950751 (-)
XLOC_013416 pard6a coding upstream 99223 22028674 ~ 22094102 (-)
XLOC_013417 CT573204.2 coding upstream 154321 22083772 ~ 22083886 (-)
XLOC_013418 si:dkey-45h7.1 coding upstream 220110 22149561 ~ 22150663 (-)
XLOC_013419 tmem170a coding upstream 476256 22405707 ~ 22414565 (-)
XLOC_013384 BX323829.1 misc downstream 2371454 19542102 ~ 19542231 (-)
XLOC_013398 BX470160.1 non-coding downstream 1067372 20846190 ~ 20846313 (-)
XLOC_013395 BX470130.1 non-coding downstream 1279762 20633789 ~ 20633923 (-)
XLOC_013388 NA non-coding downstream 1593812 20285665 ~ 20319873 (-)
XLOC_013387 NA non-coding downstream 1764588 20140072 ~ 20149097 (-)
XLOC_013420 CR933017.1 non-coding upstream 621144 22550595 ~ 22552314 (-)
XLOC_013426 BX088710.1 non-coding upstream 810281 22739732 ~ 22753637 (-)
XLOC_013427 BX663522.1 non-coding upstream 930028 22859479 ~ 22862467 (-)
XLOC_013428 NA non-coding upstream 1257278 23186729 ~ 23195554 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) LOC122346050 nutf2,LOC107726276,LOC107692933,LOC107733565 misc NC_056703.1 CM032072.1 1900627 ~ 1905499 (+)