G477430


Basic Information

Item Value
gene id G477430
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 254021 ~ 254235 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU547862
TTTGTGTTATTCCAGCTTTTCTTTCTCCTCCTCAGATAAATAAATGTTCTGGATGGAGGTAGAGCTGACAGAACCCCAGGCATCCCTGTATGTTGTTTGACAGTGAGCAGGGAATGACAGCTGTTCAGCAGTACAGAACTCAATCTGTCCTCAACTCCTCAAGAAGTGTGCACTGCCTTTCACACCTCACACACAACAGGAGCCCACTGCACCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU547862 True 215 lncRNA 0.47 1 254021 254235

Neighbor

gene id symbol gene type direction distance location
CI01000335_00193513_00197704 NA coding upstream 56257 191873 ~ 197764 (+)
CI01000335_00149953_00163006 TFEC coding upstream 90482 149953 ~ 163539 (+)
CI01000335_00103583_00132304 NA coding upstream 121592 103472 ~ 132429 (+)
CI01000335_00077557_00081374 CD5L coding upstream 172535 75813 ~ 81486 (+)
CI01000335_00286459_00296460 NA coding downstream 30492 284727 ~ 297256 (+)
CI01000335_00489106_00492720 NA coding downstream 234453 488688 ~ 492973 (+)
CI01000335_00526951_00528066 GPR85.L, GPR85 coding downstream 272716 526951 ~ 537487 (+)
CI01000335_00586957_00597421 TMEM168A coding downstream 332722 586957 ~ 598108 (+)
CI01000335_00681430_00741137 DOCK4B, DOCK4 coding downstream 427195 681430 ~ 741222 (+)
G477422 NA non-coding upstream 42426 210793 ~ 211595 (+)
G477410 NA non-coding upstream 63031 190784 ~ 190990 (+)
G477409 NA non-coding upstream 64582 189182 ~ 189439 (+)
G477407 NA non-coding upstream 69327 184464 ~ 184694 (+)
G477431 NA non-coding downstream 19508 273743 ~ 273950 (+)
G477435 NA non-coding downstream 25333 279568 ~ 279783 (+)
G477436 NA non-coding downstream 26689 280924 ~ 281129 (+)
G477438 NA non-coding downstream 36572 290807 ~ 291031 (+)
G477451 NA non-coding downstream 64131 318366 ~ 318596 (+)
G477502 NA other downstream 295287 549522 ~ 554633 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location