XLOC_013415 (tsnaxip1)


Basic Information

Item Value
gene id XLOC_013415
gene name tsnaxip1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21931741 ~ 21950751 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026497
CACCCCTCAAACAACAACAATGCCACGCCGCTGAAGCTTTGGTTGGACGTATGATATTATATTTGCTGCGAAATATTCAAAAGTTATTTATTCGTCCAGATGGCAGTAAAAGATCTACAGCTGCCCCCGCTGCTACACTCAAGGTCATCGTCTCAATTTGAGTCTAATGATGACAACAATAGAGGATTACAGCGACACATTGCAAACAAGATGTCTAGAGCAAAATTGATAAAACAGACCAAAGAGAAGGAAAAGAGTTATTTTTCATCTGAGCCTGCTGAAGTTACATTTCAAAAGCCCAGACAAATAAGAAATTATGGGTCTCTTGCCAAGCCTCGTTTCTTAGAGCAACTGGAGTGTCTTCTCAAGAGAGAACTAGAAGTTTTAGACAACACACAGGACTCTAAAGTCCAAGAGCTCAGACTGCAGGTTTACCAAGAAGTCTTTGGCCATTTAATTGAAGAATTTAAAACCTATAAGCCTATTTTGTCTGCCATCAAAAAGGAGTATGACATCACATTAGCACATCTGCGAGATCAGATCAGGGATCTGCTACCGCTACGGCCGAAGCTGGTGCTCGTGTCAGAACAATGTGACAAGAAGATTCTGGAAATGAGAGTACAGGAAAGAGAGGAGGTTCGAGCTCTGAAGCAAGAGTGCAGGCATCTGCAGAGCGTCATTGAAAGCATGAGGTCACAACAGAGTGCTCTGCAGATTCAGGTTGATCATCTAAAAGAGGATCTAGCCACCCAGTATCAGCTCTACAGGGACGAACGTGATGCACGAAAGCTGCTCATCACCAGAATCAGCACAATGCAATCTACCCAAGATGCCGaacatgatgataataatgaagAGGATGAGTCTGAGGATCCTGTGGTGGTGAAAATGGCTTTACAGGTGTGTCGAGAAGATCTTACCAAAGCCCAGATTGAACTCAACCGCCTTCAAGCTGAATACAGTGATGTGGTCCCTCGACGAGATTGGGACAACTTGAATCACTTGCATGAGGAGACGCTAATGAAGCTGGAAACCCTACAAACAGACTTCAACCAGGTGAAGTCTGAATATGACACACTGCTGGAGGTTCATCAAAAGTCAGCACCGACTACACAGCAACATGGCTCAGATAGCCAACACATTGCCACAACTCCCAGGCCAAACTGGGAACAGTGTTCAGATATACTCGGAGGGACTGAGCGATGTAAAGAGCTTTTTGAAGGTCAGTCCAGCCAAAAGAGGCTGGAGATCTTGATGAAGGAGATTAATAGCCAAAATCAGTTCTTCACTGGACTTGGAACATCCAGTGACGTGCCCATTTATCTGCGATATGAGGGGAAACTTAAAAATCTTAAGCTCAAGAAAGCAGATGTTATTAAGGTAATAAAAGAAATATGGAGAAACAAAATGGCGGATAATGAAAAGAATGATGACCCCAGAGATCTGCAGACGTTTCTTCACAGCTATCTTGTGGAACAGTATAAAGATAAAGCAGGAGAATGGGCTTACAGCCTCATGGAAAGCGTACAAAACAATCTCAAAGATGATCTCATTTGCCTTTTCAATGATGTCTTGACTGGAAAGGTTGATGAGAGTATCTACCATGGACAGACACAGCTGCTGTCTCACTTGCTTAAGGTTTTAATTCAAAGTGACATAACGCAATGCGGATCACTGACTGTCTCAGAATTTAGCGAGGCATTGAGGAAGGCTTTCCCTCTGAAGTCGGATCAGGACATTGAGGAGCTGTTGGCGGCGGCTCAGACAGAGCTGGAGAGCAGTGGAGTGCGCATTTCTTATCAGACACTTTATACAGAGGACACAGATGGACAACACAAAGAATTCCTGAGTCTAGTCAAAAAACAAGCTACCGCTGAGAGGCTCCAGTACATCAGTGAGCTTAGAGCTCAGTTGGAAGGCAAAGGGGAAGTGGATGCAGAGCAGCTCTGGGTTGCCTTCAAAACTATTGATCCCTCACTGGAACCTGAAAATCTGGAATGGAATCTCAGTGTAGCTTTTCAGACAAAGGAGAGTGAATTACAAGCTCAAGCTTTGGAAAAGGAGGTTGTGCTACAGCGTCTCTCTGTGGCTCATGTCAAAAGGGCAGGGCCAAAGGGATGACCGTTGTTACTCCAAGCACATTCATGGGCTATTTATAACACACTACATATAGTAACCAAGCATAGCACTTAGGCATAGAAATGCCTCTGTGGtggtagtgttttgaaaaatcccATATCAAAGATTAGACAATGATAAGTAATGGAATGCTTTTGTTCAATAGCCTAATGTTTTAAAGAGAAAGAAAACTTGTTTGTCTTATAaccttttacatttacaaatatttatattaacattttaaatcaacagagatttattcatttgtatttttgcataaattaCTTGAGAATTGTCAATAGATCATACATTTATATcgatttgttatatttattatttgttctgCTGCTTAGTTACAATTGAATGTCATTTATTAACAAGAGCCATGCTTTCTGACAAAATGACGAAAAGGAATGTTACTTTTTTccaacaatttattatttaacactGTTCAGTCatcttttaaataaacttgaaaccttttttt
>TCONS_00026498
aagtttcatacaaattctgaatggattatagcctggaaagtgcacagcacgctcctcttattatcactaaaaagagtcactaatcttagttcatagagatctcacaaagatccgttataatttataaagctctctaaattacacaatgaatcttttatttacatggcgtctacactcaaaagatgattcacgagcacacgaaatggcacttaataaaaaccaatccggcgctttcagtagtgagtgaattctgtgaatctagagaaatgacagatcaatatccgtgaacctgatttagAATCTGTAATTGTGTTGACTGTAATGTTGTGGCAGGTTGATGAGAGTATCTACCATGGACAGACACAGCTGCTGTCTCACTTGCTTAAGGTTTTAATTCAAAGTGACATAACGCAATGCGGATCACTGACTGTCTCAGAATTTAGCGAGGCATTGAGGAAGGCTTTCCCTCTGAAGTCGGATCAGGACATTGAGGAGCTGTTGGCGGCGGCTCAGACAGAGCTGGAGAGCAGTGGAGTGCGCATTTCTTATCAGACACTTTATACAGAGGACACAGATGGACAACACAAAGAATTCCTGAGTCTAGTCAAAAAACAAGCTACCGCTGAGAGGCTCCAGTACATCAGTGAGCTTAGAGCTCAGTTGGAAGGCAAAGGGGAAGTGGATGCAGAGCAGCTCTGGGTTGCCTTCAAAACTATTGATCCCTCACTGGAACCTGAAAATCTGGAATGGAATCTCAGTGTAGCTTTTCAGACAAAGGAGAGTGAATTACAAGCTCAAGCTTTGGAAAAGGAGGTTGTGCTACAGCGTCTCTCTGTGGCTCA
>TCONS_00026499
AGGTTTACCAAGAAGTCTTTGGCCATTTAATTGAAGAATTTAAAACCTATAAGCCTATTTTGTCTGCCATCAAAAAGGAGTATGACATCACATTAGCACATCTGCGAGATCAGATCAGGGATCTGCTACCGCTACGGCCGAAGCTGGTGCTCGTGTCAGAACAATGTGACAAGAAGATTCTGGAAATGAGAGTACAGGAAAGAGAGGAGGTTCGAGCTCTGAAGCAAGAGTGCAGGCATCTGCAGAGCGTCATTGAAAGCATGAGGTCACAACAGAGTGCTCTGCAGATTCAGGTTGATCATCTAAAAGAGGATCTAGCCACCCAGTATCAGCTCTACAGGGACGAACGTGATGCACGAAAGCTGCTCATCACCAGAATCAGCACAATGCAATCTACCCAAGATGCCGaacatgatgataataatgaaggttACGTTAATAGTGGAgtctgaaaaaaaacaataaacatgaaaacaaaatactaTTTGAATTTATGTATCAATATAAGGACTTGAGCAGAGGTGTGACGGTAGGCAAAGTTTTACATGTTATGCCATATTTTCT

Function

symbol description
tsnaxip1 Predicted to act upstream of or within establishment or maintenance of cell polarity. Predicted to be located in bicellular tight junction and membrane. Predicted to be active in cytoplasm. Orthologous to human TSNAXIP1 (translin associated factor X interacting protein 1).

GO:

id name namespace
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-39 Predicted to act upstream of or within establishment or maintenance of cell polarity. Predicted to be located in bicellular tight junction and membrane. Predicted to be active in cytoplasm. Orthologous to human TSNAXIP1 (translin associated factor X interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000030512

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026497 False 2605 mRNA 0.41 17 21931741 21950751
TCONS_00026498 False 842 lncRNA 0.43 4 21932253 21936575
TCONS_00026499 True 564 lncRNA 0.41 4 21944205 21947172

Neighbor

gene id symbol gene type direction distance location
XLOC_013414 nutf2 coding downstream 2290 21913685 ~ 21929451 (-)
XLOC_013413 nrn1la coding downstream 20750 21782074 ~ 21910991 (-)
XLOC_013412 pskh1 coding downstream 182775 21728194 ~ 21748966 (-)
XLOC_013410 fan1 coding downstream 205936 21686115 ~ 21725805 (-)
XLOC_013411 BX548157.1 coding downstream 211690 21712296 ~ 21720051 (-)
XLOC_013416 pard6a coding upstream 77923 22028674 ~ 22094102 (-)
XLOC_013417 CT573204.2 coding upstream 133021 22083772 ~ 22083886 (-)
XLOC_013418 si:dkey-45h7.1 coding upstream 198810 22149561 ~ 22150663 (-)
XLOC_013419 tmem170a coding upstream 454956 22405707 ~ 22414565 (-)
XLOC_013420 CR933017.1 coding upstream 599844 22550595 ~ 22552314 (-)
XLOC_013384 BX323829.1 misc downstream 2389510 19542102 ~ 19542231 (-)
XLOC_013398 BX470160.1 non-coding downstream 1085428 20846190 ~ 20846313 (-)
XLOC_013395 BX470130.1 non-coding downstream 1297818 20633789 ~ 20633923 (-)
XLOC_013388 NA non-coding downstream 1611868 20285665 ~ 20319873 (-)
XLOC_013387 NA non-coding downstream 1782644 20140072 ~ 20149097 (-)
XLOC_013426 BX088710.1 non-coding upstream 788981 22739732 ~ 22753637 (-)
XLOC_013427 BX663522.1 non-coding upstream 908728 22859479 ~ 22862467 (-)
XLOC_013428 NA non-coding upstream 1235978 23186729 ~ 23195554 (-)

Expression


Co-expression Network