G477441


Basic Information

Item Value
gene id G477441
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 327884 ~ 393126 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU547875
CGCCATCCAAGGCTTTCTTTCTTTCTTTTCTTAATAAAAAAATTAAGGTTGTTGAGGTAAACACAACGTGTGACCTTTCCAACGTGATTACGTAATGCGTGGCACATCGCAGAGCTAGTGCAAGAAGAGCATCTGTGGTTAAAAAGTATATAAATTTTTCTTAGAAAATGACCAATTGTTTCGCTAGATAAGACCTTTATTCCTTGTCTGGGTTCGTGTAGAGCCCTTTGAAGCTGCACTGAAGCTGCAATTTGGACCTTCAACACATTGGCAGCCATTGAAGTCCACTATATGGAGAAAAATCCTGGAACCTTTTCCTCAAAAACCATAATTTCTTTTCAACTGAAGAAAGAAAGACAAACATCTTGGATGACATGGGGGTGACCAAACCACCA
>TU547873
AAAAAAATCTTACCATCCCCAAATTTAACAGAATTAACAATAGCGTAAATATATGCACACAAATTAAATGCTAGCAAATGTGACACATTTTTGAACAGTTATTCTACACAAAATGAACTAAGCCAAATTTCAAAACAAAAACGTGCACTTTGCACTGCAAATAATGATGGTATATTATATAACTATAATATAAGGGAAACACTTCAGTTAACTGACAAAAGGGCACAAAGCAACGTCTTTTGGAGGCATTATCAGCCACCTTCCAAAACTCCTCAGCCAATTTAATAGACTGTACAACTCCTCTAACCTTTAATTCAGTGTGACGTACCATCCTGAATCTATCACAAACCTTCAAAATCTCTCTGGAGACATTACAATTTGATACGCCGACTATGATGCTAACGATATACATTATATCCATCTCTGAACCTTGTACAGGTGAGTCAATTACCGCATGCCTGAATGCGATGGGAAACAGCCCAGCTGCACTGATGCATGACATGCACCTGATAAACATTCAGACCACGGGCGGCTTTCTGAGAAGAAAAAAAAAAAAAAACGTGTAGCCGATTTTCAGTGAATAATCACACAATTCTGCATCACAAAGCAGGTACAGATGTCTTAGTCTCCAGTTTAACATTTTATTTTTAGAAAATTGTAATGTTGATGGTCCATTAACAAAACAACGCTTGGTACATACTGCAGATATTTAAAAAGTGATTTAAGGACAAAGAGGAAACACATAAAAACATCAAACTCTGCTGAATACAGTATGCTGGACAGATAAAAATGCTAAGCTTTATTCACATTCTTTTTTTAAAAAAATGTTTCAGAATTATAGAACCTGAATTTTTTTATGTGGAAAACATGATTTTTTTTTTTTTATAGACTATTACATCTTTGTCTGGTCGTCTGAAATTGCAATCAGCTACAGATTTGCAATTAAATTTAAACAACTGTCTCTAAAAGGTATTTCCTTTTCTATCTCAATCTTTTTCTCTGAGAAAGGAGATTTTACATTAATGTATTTATGTCAGTGTATATTTTGGTATCAATGTATTTATTTGTATTTTTAAGCTTTCTTAAATATGTTAAGAAATTGATTAAAATGAACTTGGAAATGAAAATTTTAAAAATATGACTTGAGTTTTAGTTTGCTTACTATTAAAATGCATTTTATTCATTTGAAAAGCCTTTACAGTAACAACAAACTTCTATAAAATCTTAAGTCAACTATATTTTTTGCATATTTTCAGTGTAAAAGAGCCAGTCTTAGTCAGTTTGGTCTAAAAGTGGGTCTCGTCAAAAGACACACAAGAACTAGTCTGATTCTGGAGAGGTAAAGTCTGTAGAGGTAAAGTTGTTTGTTTTGAACCGGTTTCAGTTGAAAGTTTCAGGTCAGTTCTGTCACACTGTGTTCTGAAGTGCAGTTTGGCAAGTATGTCGTAAGCAGTTTTGACGAGATGAGTCAGACGAATCACAAACACACGACGTACCGGAGGCATTACGCACTATGAACAAAAACTAACTGTGTTAACGTTATGATGCTAACATAAGCTTACGTAATGCCGACAAATGCCAGCTTTGTACAATTCACAAGAAGGTCTCAGGCAATGCAATCTGAATTACATGTATGATTTAACAGTCAAGAAAAGTAACACTTTGCAATAGTGTGTTCAGTTTTCACCTAAGTACTAAAGCAAAAAGGTGCTTTTATAGTGTATATTTAGCAGAGGCTTAATTTTAAAAAAAAAAGTCAAGTTTATGCATAACTTGCAAGATGCATAAAATGGATTTCGGCATCTGCATTCTACACTATGGACCCTTTTCACAGACTGTGATGACATGTTCATCAGCATCGTAAAAGTTTTTTTTATAGTTTCTTTTTTTTTTTTTTTTTTTAAATGTATGTACATTTATGGCACTATACTTTGTATTATATTACCTTTGCATCAAATTACAAAAAACCTAGTTAGGATGTTTCTAATACAGCGGTTGAGGGAGTGACAGTAAAACTGACATTAATCTCTATTTTTTCCTCTTTTTGAAAGTTGTGAAAACACTATTGAGGAGTTTTTCTTTTGCTATTTGAGCAAATGGGAACACAAAAAGTATATACTTGAAGGATTAGTTCACTTCAGAATTCAAATTTCCTGATAATTTACTCACCCTTATGCCATCCAAGGCTTTCTTTCTTTCTTTTCTTAATAAAAAAATTAAGGTTGTTGAGGTAAACACAACGTGTGACCTTTCCAACGTGATTACGTAATGCGTGGCACATCGCAGAGCTAGTGCAAGAAGAGCATCTGTGGTTAAAAAGTATATAAATTTTTCTTAGAAAATGACCAATTGTTTCGCTAGATAAGACCTTTATTCCTTGTCTGGGTTCGTGTAGAGCCCTTTGAAGCTGCACTGAAGCTGCAATTTGGACCTTCAACACATTGGCAGCCATTGAAGTCCACTATATGGAGAAAAATCCTGGAACCTTTTCCTCAAAAACCATAATTTCTTTTCAACTGAAGAAAGAAAGACAAACATCTTGGATGACATGGGGGTGACCAAACCACCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU547875 False 395 lncRNA 0.39 3 327884 393126
TU547873 True 2569 lncRNA 0.34 2 329290 393126

Neighbor

gene id symbol gene type direction distance location
CI01000335_00286459_00296460 NA coding upstream 30628 284727 ~ 297256 (+)
CI01000335_00193513_00197704 NA coding upstream 130120 191873 ~ 197764 (+)
CI01000335_00149953_00163006 TFEC coding upstream 164345 149953 ~ 163539 (+)
CI01000335_00103583_00132304 NA coding upstream 195455 103472 ~ 132429 (+)
CI01000335_00077557_00081374 CD5L coding upstream 246398 75813 ~ 81486 (+)
CI01000335_00489106_00492720 NA coding downstream 95562 488688 ~ 492973 (+)
CI01000335_00526951_00528066 GPR85.L, GPR85 coding downstream 133825 526951 ~ 537487 (+)
CI01000335_00586957_00597421 TMEM168A coding downstream 193831 586957 ~ 598108 (+)
CI01000335_00681430_00741137 DOCK4B, DOCK4 coding downstream 288304 681430 ~ 741222 (+)
CI01000335_00884515_00888701 NA coding downstream 491212 884338 ~ 888831 (+)
G477458 NA non-coding upstream 1804 325859 ~ 326080 (+)
G477457 NA non-coding upstream 2445 325125 ~ 325439 (+)
G477456 NA non-coding upstream 2921 324762 ~ 324963 (+)
G477454 NA non-coding upstream 5977 321668 ~ 321907 (+)
G477453 NA non-coding upstream 6787 320855 ~ 321097 (+)
G477523 NA non-coding downstream 11927 405053 ~ 406281 (+)
G477489 NA non-coding downstream 130588 523714 ~ 526896 (+)
G477505 NA non-coding downstream 162122 555248 ~ 612384 (+)
G477588 NA non-coding downstream 228838 621964 ~ 622163 (+)
G477502 NA other downstream 156396 549522 ~ 554633 (+)

Expression


Co-expression Network