XLOC_013416 (pard6a)


Basic Information

Item Value
gene id XLOC_013416
gene name pard6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 22028674 ~ 22094102 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026500
ACTGCGGATCGCGACTGTCAGTTCACTCATGCTGCGCACACGAGCTCTGGCTGCCGACTCCTGCATCTAGGGGCATCTCGTGCGACACTGCCCTTGggaatatacatttatacacaccGCAAACATGTCACGGAATCACAGGACAACGCTGAAAAACGAGGAGAGTGTGGTTGAGGTGAAGAGCAAATTTGAGGGCGAGTACCGAAGGTTTGCGCTGAAGAAGAATACCGGGGGCTTCCAGGAATTCTACCAGCTGCTGCAGACGATTCACCGGATCCCTGGAGTGGACGTGCTGCTAGGATATGCAGACATCCACGGAGATCTACTTCCAATCAACAATGATTACAACTTCCACAAAGCCCTGTCCTCAGCCAACCCGCTGCTTCGAATTATTGTTCAGAAGAGAGATGTAGACGACACTGTGCCGTTCCCGACCGGCTCTCTTCAGAGAAGAAAAAAGGGCCTAGGTGGTCTGCGTCAAGCACAGCCGAAGAGCAGACCACCACTCATCGGCCTTCCTCAAGATTTCCGACAAATCTCCTCTATCATAGATGTGGACATCCTACCCGAGACGCATCTGCGTGTCCGTCTGCACAAGCACGGCACCCACAAACCGCTTGGATTCTACATTCGTGACGGCGTCAGCGTTCGTGTCACTTCTCACGGTGTAGAGAAATTCCCCGGCATCTTTATCTCTCGCCTAGTGAAAGGCGGTTTAGCCGACACCACTGGGTTGCTAGGAGTAAACGACGAGATTCTTGAAGTGAATGGCATTGATGTGTCAGGAAAATCACTGGACCAGGTCACTGATATGATGGTGGCCAACAGCCACAACCTCATTGTTACGGTAAAACCTGCAATTTACCGCAGCTTAGACGACACATACCGTACATTTAAAACATCAGCTGGAAACAGTTCTGCTGGCTCAAGAGGCTCCGCCCTCTCACATGACTCCGCCCACAGCCCCGCCTCTCAGAACACCAGTCAATACAGCAACAGTAACAGTGTGGCAGAAGGTGACAGTGATGATGATACTGACCTGATCATCGAGAACGACAACCTGTCCACGTACGCACCAAACCGGCTGACTAATGGCAACGGCAGCCATGGAAATGCCCAGTCGTCAAGCGCATTTGCACACAGGCCCCTCCCACAAAGTGTTTCCTTGCCCAGTAGCAGCTCTTTGAGCTCCCTGACCACACCCACACACAACGGCAGCCCGACCAAGACAAGCAGTAGCCAAGAAAGCATGAGGGAAGACGGCAATTTTATCACGTTGTAGGCTTCACACTACATTTGGAGCCTTTTATGCACATTTATGAGGAAACGAATGAAGGTTTATGTTACTTTTTCAGCCATTACTATCATGAACAACAACCTATTCAACAATCTTCCCCGTGAATGAGGACCCTCAGCCGGATCACACGGGTTGCACAATCTAACCAGTGTGTGAGGACATGCGGTTGTCACTGTATGGAAGTGCCTCTCCTTTCGCCTTAGTTGTTTTATTGGGACAAAATCGATCATATTCATCTCTATAGACTTAAGAAGTGTGTTCACTACTTTATTGGGATGCCTGACGTTAAACTCAGAGTACGTGATGAAGTACAGATGAATGATTTGCTTCTGTGGAAATGATGCGTGTCTTTTTGTGGGCTCATCCCAGTTTTTATAATGCCTCTTGcattgatgataatgataatgatggtgAAAGATGATAACGAGAAGGAGGAGGTGGAGAAAATATAAGAGTGTTAAACTGGATCATGCTCACCTCATTCTGATGCTGATCATAGTTTCTGTTATGCAATGTCCACCAAAATGCTGATTCTGAAGTGGTGTTCATTCCCTTATAGAAAACCCACATGAGCTAAAATCATGTTATAATCACACATGGAACACATATTAAACTAAAGTTCACAAAACACAAATTCAAgtgaaaaatgtgtttaaatatgaAGCTCATGTGGTTTTTCTGTAAGATTTACTTTCATCTCTAAACTAATtagtgtttattatattattaacatttaaaaactttaatactCCCAGGTACTCTTAGGTTTGACGTACGTTATCAATGTTAAGAAAGGCTTTTAATTTATTGCTATTTTCATACATAGAAACGGAAGCCTCTTTGGGTTGCTCCTATGTCTAATGTTATTAGTTCTTCCTCAAATACTTCAACATgtacttgttccaaacccatgTATCATTTTTTTCtatggaacacaaaagaagatttttgaaGAATCTTGGCTATCAAAACCAGTTTGTTTACCACTGAATTCCAATGTAAGGACTTAACAAAAACACTAAGACCTTTCTTAAGATATCATCTTTTATGTTTCACAGATCAGCTTTGCAACAACTTTGATTATTAACATTCGgatgaatttttaaaaactatttattgacGGATTATAAAAAAATCTTCCATTTTGAAGGACGTCCACCCATTTTCTGACTTTGTTTTTAGCTTTTCTCCCCTCCAGAAACATTTAAATCCATACACTTAACTGGGAAGAGTGCGGCGTGAATTCAGAAAGACTCGACCTCTCATTGACACAGCCGGTCCGTTCTCCTGTGTGCTCTGTTTTTTTGTAAGCAGAAAAAAACGAAATTCCTTTTATGTTTGGAAAGGCCCGAATTCTGCACATTGGGACCTTTTTCACACAGACCAATCCTGATGGCCAAAGCTGTGAGGCTTTCTTAGCCACGTTGAGAGTGTGTTCTGTCATATTTTTGAAGTGTAATCTTACAGAAACGGCACTGAGGTAGACATTGTCAGACTCTGGGCCAAATATTGGtttctttaatgttcaacaggCTCGGGCGGCATTTTTCAGGCAATGAGTTCCCAGATGAATGCTTGAGAAATACCTGCCTCGGGACGTCCAGCACTTCAAAGGCTGTATATCAAACCATAAGGCGTTAATGGAGGgtaaaaaatgcataaaacatcCTAGTGACACTTTTTACCAgctaaaataatgataatagggATATATATTTGGGGATGCTCCTATATTTTTTTCAGCCATTCTGAATGTTTTaaaggacatttttgagtttttttttttttcgtgccaGTGAAAATAATCACAAATTCTGTGTTTCTGTCATATCTGATGGCTGTGATTCATGAAGCTAAAGCCTCATCTGCTGAGCATTATCTAGTTTTACTCAATCAGCAAAACAAATGAGGTGTTATTTCGCCGCAAAACCGACATTTATCACGGTAGCCTTGAGTGTGAAAGAGAATTTAGTTTATTTGATCTGGACTAGACGTAACATCTGCGCATCTGACACTCAGTGTGACTCATTGCCTCAGGTTGAGAGCAACTGAAACTAAAGGGTGATTTGAAACTGATAGCAGGAGACATCTGAAGAAGCGTGAactgtctttttgttttgttatattatacttaatttaatatattttattggcGTTCTTGGGTTAGAGAGAGTAAAAGCTGATGTGCTGATTTTAAGAGAAAGTGAATGGCATATGAGTTTCATACGGACACAAATCGGAGCACGATTAATACCACATGagcattattttttgtgtgtatgttagtgtatatgtataaatagaaATATGAAATGATGGACACTTTTGTACACTAAGAGCCCTTTTTATAAAAAAGAGCATTTTATATATGTGTAAAATATGGAAAGTATTTTTCTTATTCTTGTACTTTTGTATGTATATTAGAATTCTGGAGAGGAGGTTTCTATTTCTTTTGAGTATCGCAAACAAAGCTAAAATCTTTAGATGCTCGTGTTTTTATTATAATCAGATGGGTCAAGGTGTACAATACTGTGAATGTTACAAGCTGATTATAAAATGTTCTATCAAGataataaaagtatttaataaataa

Function

symbol description
pard6a Predicted to enable protein kinase C binding activity. Acts upstream of or within neural tube formation. Located in apical plasma membrane. Orthologous to human PARD6A (par-6 family cell polarity regulator alpha).

GO:

id name namespace
GO:0060341 regulation of cellular localization biological_process
GO:0001841 neural tube formation biological_process
GO:0007098 centrosome cycle biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0005634 nucleus cellular_component
GO:0005938 cell cortex cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005080 protein kinase C binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-215 Predicted to enable protein kinase C binding activity. Acts upstream of or within neural tube formation. Located in apical plasma membrane. Orthologous to human PARD6A (par-6 family cell polarity regulator alpha).

Ensembl:

ensembl_id ENSDARG00000069378

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026500 True 3890 mRNA 0.41 3 22028674 22094102

Neighbor

gene id symbol gene type direction distance location
XLOC_013415 tsnaxip1 coding downstream 77923 21931741 ~ 21950751 (-)
XLOC_013414 nutf2 coding downstream 99223 21913685 ~ 21929451 (-)
XLOC_013413 nrn1la coding downstream 117683 21782074 ~ 21910991 (-)
XLOC_013412 pskh1 coding downstream 279708 21728194 ~ 21748966 (-)
XLOC_013410 fan1 coding downstream 302869 21686115 ~ 21725805 (-)
XLOC_013418 si:dkey-45h7.1 coding upstream 55459 22149561 ~ 22150663 (-)
XLOC_013419 tmem170a coding upstream 311605 22405707 ~ 22414565 (-)
XLOC_013420 CR933017.1 coding upstream 456493 22550595 ~ 22552314 (-)
XLOC_013421 si:dkey-11d18.4 coding upstream 601305 22695407 ~ 22696357 (-)
XLOC_013422 si:ch73-113g13.3 coding upstream 606928 22701030 ~ 22701983 (-)
XLOC_013384 BX323829.1 misc downstream 2486443 19542102 ~ 19542231 (-)
XLOC_013411 BX548157.1 non-coding downstream 308623 21712296 ~ 21720051 (-)
XLOC_013398 BX470160.1 non-coding downstream 1182361 20846190 ~ 20846313 (-)
XLOC_013395 BX470130.1 non-coding downstream 1394751 20633789 ~ 20633923 (-)
XLOC_013388 NA non-coding downstream 1708801 20285665 ~ 20319873 (-)
XLOC_013387 NA non-coding downstream 1879577 20140072 ~ 20149097 (-)
XLOC_013426 BX088710.1 non-coding upstream 645630 22739732 ~ 22753637 (-)
XLOC_013427 BX663522.1 non-coding upstream 765377 22859479 ~ 22862467 (-)
XLOC_013428 NA non-coding upstream 1092627 23186729 ~ 23195554 (-)
XLOC_013429 NA non-coding upstream 1307028 23401130 ~ 23403453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_03019688_03044233 TSNAXIP1, PARD6A coding CI01000013 null 3019688 ~ 3044374 (+)
striped catfish (Pangasianodon hypophthalmus) G66281 NA misc NC_047598.1 CM018544.1 17593748 ~ 17634868 (-)
striped catfish (Pangasianodon hypophthalmus) G99801 NA non-coding NC_047600.1 CM018546.1 15176175 ~ 15180912 (-)
bowfin (Amia calva) G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding CM030127.1 CM030127.1 17364823 ~ 17370446 (-)