G477502


Basic Information

Item Value
gene id G477502
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 549522 ~ 554633 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU547947
TGGTTTCGCTAGATAAGACCCTTATTCCTCGTCCGGTATCGTTTAAAGCCCTTTGAAGCTGCACTGAAACTGTAATTTTGACCTTCAACCATTTAGGGCCAATTAAAGTCCACTATAAGGAGAATAATCTTGAAATGTTTTAATCAAAAACCTTAATTTCTTTTCGACTGAAGAAAGAAAGACATGGACATCTTGGATGACATGGGGGTGAGTAAATTTTAAGGAAATTTTTATTTGAAAGTGAACTAATCCTTTAATGGGAACGTTACTAAAACATTCTTAGAACATACCATTATTGTAGGGCGGAAACCTCATCTCCATATTTCATCATTTTCATTTTTTTGCATAAATCCTTACTATTAGTTCACATTTACGTCTGTCTGTGAGTTTTGCAAATATTTAACCAATGAAAAAGAGCTTGTGACTAAAACTGGATCCTCAAACTGTCAGTCAAACCTCATAACTCCACCCCACCTCTATCGTGAATGAAGTGCTGCACGCAATTTGAATCATCTCTGCTTGTTTGCAATGCAGGGGTAAATAAAGAACTAGTTCTTTGAAATAGTACAGCATTTTCTTTACTCAAGAAGCACTACATTAAGGCTAATGTTTTATGTATTTGAGGAGTGTAGAAGAGTCAAAGGCTTAGATATACAAAGACAGTGCACTCATATTACTAAAGTGCAATGCGCAATATAGAAGAATAGTCCCACCTTCTAAATAAAACAGCCAATCGCTGATTAATAAAGTCATCACATCACTGCAGCTGCCATTAGTAGCTCATGTTGCATTGTTCTAAGATAGGGCTGAACATATACGCATTGGCTGGCCTAGCCTGAAAAATAGGCTTTTTTAACACTATTTAAACATAAGAAACAACATTTATGGGACAGTTCATGTCAAATTTTGTTATTTAATTGTGAGTTCAGCTAGCAGTTTTTGAGACTATCAGTATTCCCCCATTCAAGTAGATATGGCTTAGTCTTGGATGCCTGACATAGCTGTCTGGAGGCGTTGCAAATATGGCCACTGATTGAACAGACTTTCCTTGAAAGGGACTTTGGAAGAGTGTCTCACTCTAGCATTTGTCACCGAGTCATAGCCAGCACTGTATTAACTAAGCCTATGCATAGTACTTTGTCTTTAATAACATGAGATTTTGGCCAAATTACAAAACAACAACAACAACAACAAAAAACTGAGCACCCACATAGCTACAGTAAACTTTATAATCTGTAAGTTAATCAAAACGTTAATGCGATGCACTTACTGCCTCAGACGTGGCCATTCTAATGACAGACTAAACACGTATATCCAAAATCCTCAGAAATTCGCTGGTCAAAAACCTCATAACTCAATTGTAGCTTGTTTTTGGTTAGCTGGGTATAAGCTATTTTATAGTTCAAAGGGCGGCTCTCAAGTCAGAAACCTGTGTTTGGTCAAAGCAGGTGTCGGTGCCGCTCTCTGTCCCTACATGCATCTCTGTCTCTCTTATCTTTGGGGACCAATGCTCCAGCAGCATGTTTGTGCCAGGGCCTCAACTCAAGATAAAGTTAAAAGTAAAATCCTGCAGCCAACAACCTCTCGGTCTCAGATAAGCATCCCGTGTTTGCAGGTCCTGCAGGGTGTTTGGTGGAAAGAAGAGCAACAAGAATTAATGGAGACAAAATGGTTACACCATAGCCATCTTTTTTTTTTGCTGTCTACTAACCCCAAAACCTCCAACTGATGAATGGATGCTTAAACAGATAGGTCACTGCTTTTTTCTTCAAATTCTCAAGAGAAACTTTATTTATTTCAAAACAAAAATATAAGCTCAGGATAACAAACTGAGTGTGAATGTTTGCTTCAGAGGAATGAGTATTTCCACTGCACACTTAATCAATACGCATCATAGTGAATTAGGCCATGTAGACAGGGCCGAGCCATCAGCACAGCGGCTTTCGGAAGCCTCAGGGATCTCTGATCTATCTGTTAATGTACAGTTCGCTGGCTGAGCCAAACTAATCCTCTTCAGGTCCATCCCTAACATTGACTCAGTGTTGTACAACATGCTATTATATCACAACAGAGGAACGCTCTATTACTCATGTGCGTGTGTGTCGTTTTGGAGATTTGAGCCTGGTGGTGTGGGTGCATGACCCTCTTTTTCTTCCTTTTCCAGTCGAAATCTCTTAAAGGACACATAAAATGGCATTCTGCAAAACATTTAACTTCTTTACTGAATAAAACAGAATATTTAGTGGTCAGAATTTGATTGGATAATGAAAAGTAGGTTATTTTCAGTTAAATATCATGTTGCTCTACCTGTACTGTGTACCATTTAAAATATTCCAACATATTCCAACCATGAAGTTGTTCCATCGCCCAATTTTTTTTTTTTTTAAGGAATCAAAAAAGATTTGCTAACATTAGCTTTGCAGGTTTGATTATCAACAGAGCGACATCAACTGCGATGCTAGCATTTGTGATTATCAACAGGACCATTTACCATTTTTTACCCACCTGGTTTTATTACCAACTCATGTTGGAAATTTGACTCAGTGATGCATTTTATTTGCTTGAAAGTCAACATTTATCATCAATTTATCATCTCTCCGGGTGCTGCCATGTTTGTGCAGTCTTCAAGTGTTATTCAGTTGCATTATTTCCCAACAGGAAGGTGGATTTTTTTCCTGCAGAAAAAAAGGCAGAGAAAAATCACAATTTGATGAAAGATTTACATTGTTACAAATGATTCTATTTCAAGTAAATGCTGTTTTATTTTTTCTATTCATCAAAGAATCCTGAAAAAAAACCCCAAAGGTTTCCACAAAAATATTAAGCAGCACTTTTTTTAACATTGATAATAAGAAATGTTTCTTGAGCAGTAAATCAACATATTAGAATGATTTCTGAAGACACAACGAAGAATAAGTAATAGCTGCTAAAAAATTAAGCTTTGTCACCACAGAAATAATTGTACAATATTACTGTTTTTACTGTATTTTTGAACAAATATATATATTTATTTATTTAAATCTTATAGACCCTTCTTTCAAAAACATTAAAGAATCTTACCGACCCTAAACGTTTAAACTGTAGTGTAAATGGAGTTCATTTTATGCTCCTCAAGAGGCGCACTAGCAACTGAAGCTAGAGGCTGTGGTCTTTAGAGTCCCTGTTAGTGTGCCCGCCTTCCATGCCTGAAATGCCGGTTCAAATCCCGCTGGGAGCGGTGCGTGTAGAACCGGGAGGGGTTTAATTGGTGCCATGACCCGGATGGGAGTGAGGTTTAGGGGGTGAGTGTAATGGGGGTCAGATAGTAAAGAGCTTTGCAAGTAAAACCTCACTTCCCTGTCCTCAAGAGGCACACTAGTGATTGACGTTAGAGGCTGTGGCGTCCTAGTTAGTGTGCCTGCCTCCCAGTGCCGGAAACGCTGGTTCGAATCCCGCTTGGAGCGGTGCGTATAGAACCGGAGGGATTACATTGGTGCCGTGACCCAGATGGGGAGTGAGGTTTAGGGGGGTGAGTGCAATGGAGGCCAGCTAGTAAAGAGCCGTGCAAGTAAAACCTCACTCCCTTGGCCTCAAGAGGCACACTAGCAACTGATTCTAGAGGCTGTGGTCTTTAGCGTCCTTGTTAACGTGCCTGCCTCCTTTGCCACAAATGCTGGTTCGAATACCACTCGGAGCGGTGCATGTAGAACCTGGAGGGGTTTAATTGGTGCCGTGACCCGGATGGGAGTGAGGTTTAGGGGGTGAGTGTAACAGAGGTCAGATAGTAAAGAGCTTTGCAAGTAAAACCTCTATCAACCTGGCCTCATAAGGCACACTAGCGACTGATGCTAGAGGCTGTGGTCTTTAACATCCTAGTTAGCGCGCCTGCCTCCCAGTGTTAGAAACAGTGGTTTGAATCCAGCTCGAAGAGGTGCGTATAGAACTGGAGGGATTACATTGGTGCTGTGACCTGGACGGGAGTGAGGTTTAGGGGGGTGAGTGTAACAGAGGCCAGCTAGTAAAGAGCTGTGCAAGTAAAACCTCACTCCCCTGGCCTCAAGAGGTGCACTAGTGACTGACACTAGAGGCTGCGATCTTTAGCGTCCTTGTTAGCTTGCCCGTCTCCCATGCCTGTAAAGTGGTTTCAAATCCCGGAGCGGTGCGATTAGGACCAGTTACATAATGTCTTACAAGTGCAGAGCTGACCAACTCTTACTGACTAAACTATGAAAATCAATATTCAATGAGCAATAATTTTTAAAGGTCTATCTTAATTTGAAACAGCAACACATTCGGTACACCGCAAGCATTTGTAGCAACATGGTGCCTCATTTAACGTTTATCTCCGTTTACTTTGATCACATAAACTGAGGTGCAAATTATAGGATCCAATTCAATTAAATACAGAACAACAATCAATGTTCAGGAGGAGCAGCTCTTGACTCACTGCCAGCCAATGGTTTCTGCCACGCGCTGACTAAAACTGACAGTGTGTGAGGAGCCGCGGTCCCTTCTGCTTAAAAATGCACACACAGTTGTTTTTACAAGATGACTACGCTGATGAAGGATTCTGGGCCGTCCGACCCAAATCACTGCACACTGATATTAAGCATTCGCTGTATGAACTAATTAGAGCACCATTAGCACCCGCCCTTCCTTTTCTCTCTTATTACATTATCAGTTGTGCAGCAAGAGCTTGAGGCAAAAAAAAGAGAAAGAAACATAAGAAAGAAGAAAAACATGCATTAATCATCTATGCTGAAAACCAGGTTGGACTATGGAAATATGCAAATTTAGAATATTGTTTTTTTTCCGTGAGTGTTAACTAACACTTTCTGGCTTTCTAGTTAAGATGAAGTTTCCTTCTGTTAAGCACATATGTTTAAACCTTGCTCAATATAAAGAAATGATTGCAAAAAACGAATTACTATAAATGCGCAAGATGTGCTGTGAGAAACTAAACTAAAATGGTAATTTCAGATCCATTACATAGATGTTCTTTGCCAAGGAATCCACAATATATCGGTTATCAGCCACATTTGACATTTCTTTTTTAAATTTATTTGTCGATATAGGATATTTAAAGGATTAGTTCACTTTGAAATGAAAATTACCCTCAAGCCATCCTAGGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU547947 True 5112 TUCP 0.40 1 549522 554633

Neighbor

gene id symbol gene type direction distance location
CI01000335_00526951_00528066 GPR85.L, GPR85 coding upstream 19864 526951 ~ 537487 (+)
CI01000335_00489106_00492720 NA coding upstream 56549 488688 ~ 492973 (+)
CI01000335_00286459_00296460 NA coding upstream 252266 284727 ~ 297256 (+)
CI01000335_00193513_00197704 NA coding upstream 351758 191873 ~ 197764 (+)
CI01000335_00149953_00163006 TFEC coding upstream 385983 149953 ~ 163539 (+)
CI01000335_00586957_00597421 TMEM168A coding downstream 32324 586957 ~ 598108 (+)
CI01000335_00681430_00741137 DOCK4B, DOCK4 coding downstream 126797 681430 ~ 741222 (+)
CI01000335_00884515_00888701 NA coding downstream 329705 884338 ~ 888831 (+)
CI01000335_00930276_00934328 NA coding downstream 375643 930276 ~ 936380 (+)
CI01000335_00988268_00990978 NA coding downstream 433635 988268 ~ 991337 (+)
G477489 NA non-coding upstream 22626 523714 ~ 526896 (+)
G477523 NA non-coding upstream 143241 405053 ~ 406281 (+)
G477441 NA non-coding upstream 156396 327884 ~ 393126 (+)
G477458 NA non-coding upstream 223442 325859 ~ 326080 (+)
G477505 NA non-coding downstream 615 555248 ~ 612384 (+)
G477588 NA non-coding downstream 67331 621964 ~ 622163 (+)
G477589 NA non-coding downstream 68107 622740 ~ 623214 (+)
G477497 NA non-coding downstream 70165 624798 ~ 627290 (+)
G477605 NA non-coding downstream 162465 717098 ~ 803072 (+)

Expression


Co-expression Network