G477588


Basic Information

Item Value
gene id G477588
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 621964 ~ 622163 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU548039
CAAATCTGTGGCCACCTATTTTAGAGGTATCAGTGAGGTAAAATGTGTGAAATTTAAAACAAAACAAAAAAGCAGCATGCAGCTCCACTAAATATTAGGTGATGTCACGTATTAATGGAAATAAGTTGCTGTGTGAATGTGTTTGTTGATTAATGATGTTACCTCATTAAGATGATGGACTTACATTCCACACAGTGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU548039 True 200 lncRNA 0.35 1 621964 622163

Neighbor

gene id symbol gene type direction distance location
CI01000335_00586957_00597421 TMEM168A coding upstream 23856 586957 ~ 598108 (+)
CI01000335_00526951_00528066 GPR85.L, GPR85 coding upstream 92306 526951 ~ 537487 (+)
CI01000335_00489106_00492720 NA coding upstream 128991 488688 ~ 492973 (+)
CI01000335_00286459_00296460 NA coding upstream 324708 284727 ~ 297256 (+)
CI01000335_00193513_00197704 NA coding upstream 424200 191873 ~ 197764 (+)
CI01000335_00681430_00741137 DOCK4B, DOCK4 coding downstream 59267 681430 ~ 741222 (+)
CI01000335_00884515_00888701 NA coding downstream 262175 884338 ~ 888831 (+)
CI01000335_00930276_00934328 NA coding downstream 308113 930276 ~ 936380 (+)
CI01000335_00988268_00990978 NA coding downstream 366105 988268 ~ 991337 (+)
CI01000335_01029328_01043603 NA coding downstream 407165 1029328 ~ 1043603 (+)
G477505 NA non-coding upstream 9580 555248 ~ 612384 (+)
G477489 NA non-coding upstream 95068 523714 ~ 526896 (+)
G477523 NA non-coding upstream 215683 405053 ~ 406281 (+)
G477441 NA non-coding upstream 228838 327884 ~ 393126 (+)
G477589 NA non-coding downstream 577 622740 ~ 623214 (+)
G477497 NA non-coding downstream 2635 624798 ~ 627290 (+)
G477605 NA non-coding downstream 94935 717098 ~ 803072 (+)
G477636 NA non-coding downstream 195984 818147 ~ 818353 (+)
G477651 NA non-coding downstream 238340 860503 ~ 860797 (+)
G477502 NA other upstream 67331 549522 ~ 554633 (+)

Expression


Co-expression Network