G477605


Basic Information

Item Value
gene id G477605
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 717098 ~ 803072 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU548056
AAGAAAGTGAACAAAAAAATGCTAACAATCAAAAAAAAAGAAAAAAAAAGAAAAGAAAAACCTTACCGTCTACAAGCTGCGTGACTGTCATGTTTGCGTGCCATACTGATGGGACCAAACCAAAGACGGTACACAGATTTCTAAACAATTTTTTCTTTTATGATATGGCAAAAAGTGTTGATTTTTCAAGGGGTGGTTGTTTATGATTTCACATTTTTAACTTTAGTTAGTGTGTAATGTTGCTGTTTGACAACATCTGCAAAGTTACGACACTCAAAGTTCAATGCAAAGAGAGATTTTCTTTTAAAGAATTCTCTGTTTAAGGACTACAACAAATGGCTGGTAGGGACTTCAACAAGCTTCTTCCTGGGTTAGTGACGTCACTAACCCTAAAATTTACATAAACCCTGCGCCTGAGAACATGCAACAAAGGGGGTGAGGCCATTTCGGGCTGCTTTAGAGAAGAGGAAGAGTTGTTGTAGTAGAGTGTCGTTGCCTTGCTGTCATTTTACAGCTGACTGCTTCACAAACGAGGGTCAATTCAACGTTGGATTTGCACAAAAGATTAACATGACGGCACATGCTAGTTGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCAGATGCATTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTGCAACTCAGGTTTGAACAATGTAAGGCTGAACACCGTTACTGACAATCCTCATTTTGGCTGCGTGAGATTCTCCGGCTTTGTTGTTGTTGAGCAACCGAAGCATAAGCTGTTAAAGCTCCGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU548056 True 825 lncRNA 0.40 2 717098 803072

Neighbor

gene id symbol gene type direction distance location
CI01000335_00586957_00597421 TMEM168A coding upstream 118990 586957 ~ 598108 (+)
CI01000335_00526951_00528066 GPR85.L, GPR85 coding upstream 187440 526951 ~ 537487 (+)
CI01000335_00489106_00492720 NA coding upstream 224125 488688 ~ 492973 (+)
CI01000335_00286459_00296460 NA coding upstream 419842 284727 ~ 297256 (+)
CI01000335_00193513_00197704 NA coding upstream 519334 191873 ~ 197764 (+)
CI01000335_00884515_00888701 NA coding downstream 81266 884338 ~ 888831 (+)
CI01000335_00930276_00934328 NA coding downstream 127204 930276 ~ 936380 (+)
CI01000335_00988268_00990978 NA coding downstream 185196 988268 ~ 991337 (+)
CI01000335_01029328_01043603 NA coding downstream 226256 1029328 ~ 1043603 (+)
CI01000335_01055918_01061590 TNNT2D, TNNT2E coding downstream 252846 1055918 ~ 1061716 (+)
G477497 NA non-coding upstream 89808 624798 ~ 627290 (+)
G477589 NA non-coding upstream 93884 622740 ~ 623214 (+)
G477588 NA non-coding upstream 94935 621964 ~ 622163 (+)
G477505 NA non-coding upstream 104714 555248 ~ 612384 (+)
G477636 NA non-coding downstream 15075 818147 ~ 818353 (+)
G477651 NA non-coding downstream 57431 860503 ~ 860797 (+)
G477511 NA non-coding downstream 60621 863693 ~ 881031 (+)
G477660 NA non-coding downstream 87777 890849 ~ 891075 (+)
G477668 NA non-coding downstream 100851 903923 ~ 904142 (+)
G477502 NA other upstream 162465 549522 ~ 554633 (+)

Expression


Co-expression Network