G477511


Basic Information

Item Value
gene id G477511
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 863693 ~ 881031 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU547956
TCCTTTTAGGGCTACTGTAGAAACATGACAGCGCAAAATGGCGAATTTGATGTAAGGTGACCCGTGGTGCATGTATCTAGAAATGGCTCATTCTAAGGACATGCTGTGCGACATGTGGCGAGCTGAGTATGTTTGACCCCACATACCAGCATTGGGAAAATCATGGAGAGTGGATACAAAGACATGGTTGGAGTCGTCAGTATGCAGATTGATGTGGTGATTTACTGCTTTATCATGATAAATAAAAGATTGTGATGAAGATGCTATTACTGCTGCACGATGCAGAGAAAACAAGAAAAGCTACAGGAGATGCACTTAAAAGAGGAGATGCACATAAAAAGGAGACTTCTGGGGAATCTTGACTGAGGAAGACAATACAAGAGACAAGCGAAAGAGCCTTGAAAAAAATCCAACAGCAATTCTGTGAGAACTCTCCGCATCACCAGGGTTACCATGGAAGCCATAGCCAGAAAGAAAGTGAGCGAGACAAAAAGAGAGAAAGAGATTGTTCCATCACATCATCATCCCTCTTTTTAACTTCAGCGGCTAAAGAAGGTGAGGAAGTGAGGATTCCACAAAAAAGTCTGCAGTAAGCTTCGCAGACATGGAGAAACCCAGAGTTCATCTCTCAAGGCTCTGTGGAGGTGAGAGGTGTTGAGTAATTGAGGGGGTGAAATCTGATTTTCCAAGGCAACAAGATTCTTCATAAAGCCAAGAACATTCAGAAGAAGCTTCAATATAGGGACCTTCATGGTGACTAATATTTGTGGCAACAAAATCTGTTTGACGTACTGGACATGGCATACAGGTCCTTCTCCGTTTCAGTTGTTTTCTGTCTGGTAATCATGATTATCTGATCTGTTAATGTCTCTCTATCACTGAACTATACTTGTGTTGTAAATAGAGACACTAGGAACTACACTGACTCATCCCATAGACACAGTCAAATTGTTAATTGCAAATTGTAAAGCCTAGCGGGTAATGAGTCCTATTAAATTTGGCTGTTTATTACACCTCATAGGTGTGCGGCTGCTCTCACAGTGGTTGGGAAATGGAAGCTTGACAATACCTGTGTCAGCCATAAATACTGGAAAATGCATCTAGTTTTCCTGACTGACATGAATGGCCTATTTTCCTGAGGTGTTAAATGGAGCACTGCTCCTACAGTACCTGCACGTTCTCTCTAGTAGTGCTGGTTCACTACTAGTGCAGTGCGTAGGCATGCTTGTCTGTTGACAGCATAGTGTTAATGTGCAAAAATACAAAGATGCAGTTAGTTTTTCTTCTGATCTTTCTAGTCTCTTCTTCTAAATTGTGATAGTTCTGGATCCGTGATTTCTCCAGATATTTTACAAGATATTAATAGTGATTTAAATTAGTTTTTAATTTACTTTAAGTATAGAACAATTTAAGGGTGCTTAATAAGTGATTTTCTGTTGTGCAGGAATGTTTTTATTATCTTGCCCTTTTAGACAAGGTTATGTTTTTGATGCAGGGCCAGAGTTTCAGTGTTCAGTGATTTCACATAGTGAATATGACCATTTACCAATGTGCAATAAAGGCGTAGTTCAATGGGGCATGAATAATTTGGCATTGTTATGAGTGCATTACATCAAGGTTTCCATAGTTCCACAGCATTGTCTGCAACTGTTGGGTTTGTCCACATTATTTCAGAACACAATTATTTAGATTATTCAGCTGCAGCTAAAAAGGCAGCTAAAACTGTTTGGCATATTGCATACATGTTGTGAAGTGAGAAGAAATCAAAGAACATTTTAGTCATTTTAAGACTAGAAAATCAATACACTATCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU547956 True 1813 lncRNA 0.39 6 863693 881031

Neighbor

gene id symbol gene type direction distance location
CI01000335_00681430_00741137 DOCK4B, DOCK4 coding upstream 122471 681430 ~ 741222 (+)
CI01000335_00586957_00597421 TMEM168A coding upstream 265585 586957 ~ 598108 (+)
CI01000335_00526951_00528066 GPR85.L, GPR85 coding upstream 334035 526951 ~ 537487 (+)
CI01000335_00489106_00492720 NA coding upstream 370720 488688 ~ 492973 (+)
CI01000335_00286459_00296460 NA coding upstream 566437 284727 ~ 297256 (+)
CI01000335_00884515_00888701 NA coding downstream 3307 884338 ~ 888831 (+)
CI01000335_00930276_00934328 NA coding downstream 49245 930276 ~ 936380 (+)
CI01000335_00988268_00990978 NA coding downstream 107237 988268 ~ 991337 (+)
CI01000335_01029328_01043603 NA coding downstream 148297 1029328 ~ 1043603 (+)
CI01000335_01055918_01061590 TNNT2D, TNNT2E coding downstream 174887 1055918 ~ 1061716 (+)
G477651 NA non-coding upstream 2896 860503 ~ 860797 (+)
G477636 NA non-coding upstream 45340 818147 ~ 818353 (+)
G477605 NA non-coding upstream 60621 717098 ~ 803072 (+)
G477497 NA non-coding upstream 236403 624798 ~ 627290 (+)
G477589 NA non-coding upstream 240479 622740 ~ 623214 (+)
G477660 NA non-coding downstream 9818 890849 ~ 891075 (+)
G477668 NA non-coding downstream 22892 903923 ~ 904142 (+)
G477669 NA non-coding downstream 23197 904228 ~ 904453 (+)
G477679 NA non-coding downstream 31155 912186 ~ 912406 (+)
G477681 NA non-coding downstream 34047 915078 ~ 955515 (+)
G477502 NA other upstream 309060 549522 ~ 554633 (+)

Expression


Co-expression Network