G477681


Basic Information

Item Value
gene id G477681
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 915078 ~ 955515 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU548136
CATCCATCATACTTTTTNNNNNNNNNNNNNNNNNGAATTCACTGGTGACAGGAGGTGCCGTTGGCATTGCATTCTACTTCTGTTCGTTGGCATTGAGGGAGGATCTACAACATTCCCGACTCTATACAACATCACTGACTCGTGGGAGTGTGAATAAGACTATTCACTGGCAAATTCTTGTCTTCTCACTCATCATTTCGCTTTTGTTTGTGAGTACAGCGGTCCGTTCGTAATTGTTCTCATCAAAGATGAGATGTTTGATCACGTGGGAACACCTCAAAAGAAAAGAAGGCGCAAAACCGCCTGGGACCTTACAGCCAGAGCAATCCTCTGGTGTTTCAAGAGCTTTTGAAAGTTTTTTAACAGGATGATTTCAACACTGCCTGCAAGATCAGTCAAACTTTGATGTCAGAACAGAGTATCACATCAACAAGCGCTGTAATCTCCAAATAAAACAGCCGAGGCTGACTGGGGATAAAGCCAGAAGGAATTTCTCGAACGACTCCCATTTGTCAGTCCACGCACAGTGCCAGTCACAGCAGGGACGCCCATCGAAGGAGAAGCTTCTAGACAGCAAACAGAGGGTTTGAACCACACGAATCCACATGATTATTCTTCTTCTCTCTCTTATTTAATGCAAACTTCAAAATGAATCACCTCAGGTTTCTGGATCACTTGAGGGGCTTTCGTTCTCGTTCTGCGGTAAATTGAGTGAAATGGCAACCGCAAATGTTCTCAGAAGGGTTTCCATCGAATTCAATTAGGTGAAGTGACCTTACTGAATTCAAACGTACATGGGCAACGTCTTAGTAGAAGCGTTAAGGTCAACAGTGCATCGCTTAAGCATTTTCTATTGACAGAGGCAGCCATAACATCCAAATGCAATAAAATAGCCCTTTAATTCTCAGTTAACCTGTGGGGTCGGGTTATTTATTACAAGCCATTTAGCCAAGCGCTGAAACCTCATCTATCCACAGATCATTTGATTCTGCAGTTGCTCATTAATTTGAACGTATAGCATTGTAAGCAAGTCCAACTACGAGCAAAGCCCAGTAAATGTGATTATGGCTTGCAGGGAATGCAATAATAGCTCTCTATTTTTTATGCTCCATAACACAGAATTATGTGCTGCTTACTGAAATCATTCGCCGGTATATGAGGACATCATCTCGGCTCGGGCTGTCTCTTTGTTTCATATTATTAATGCAAAGGTCACAGCTGAATCTGGAAAATTGTGACAATGCCTCCATGCCGAGGTTGCGCACGTGTATGTGTGTGCGCCTTGCTATTGGATTTAAGAGTGTGCTGTCGAACTGTTTGCTGCGTGTGCTGTTATGAACCGCAAACACTCGTAAGGCCTGGAGAGGCACAAATCAGAGATGTTGGGGAGACAGTTTTACTGCTGCAGTAAGTCACACACATCAAGCGTGAAGCCAGACCACAGCGCGCAAGTTGCTAGGCAACACCTTGAGGTCGCTTCCCACAGCTGCTGTACTGATTAGTTAATTGTGTAAGTAAACAAAATGTTGAGTAAAATCACCAAATCCACCATCCAACACAGAAAAATCAGGCAAATGGTACAAGCACCTGACACCACAAACCCACTTTCTGGAAGTATCTGATCACAGGAGCTGTACAGTAAAATGGCTTCATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAAAGTGCCCAAAATCTCTCTAAAATCAGCCAACAAAGAGAAAGAAGCATAAAGACCATTAAAGTTTTTTGCATTGTATTATTTACAAGACAATTTAAGTGCATGATTTAGAAATACTTGACAATTTTATTCATTTATTTTTTGCACATTTTCTGAATTTACTAAAATTTAACATTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU548136 True 1863 lncRNA 0.41 2 915078 955515

Neighbor

gene id symbol gene type direction distance location
CI01000335_00884515_00888701 NA coding upstream 26247 884338 ~ 888831 (+)
CI01000335_00681430_00741137 DOCK4B, DOCK4 coding upstream 173856 681430 ~ 741222 (+)
CI01000335_00586957_00597421 TMEM168A coding upstream 316970 586957 ~ 598108 (+)
CI01000335_00526951_00528066 GPR85.L, GPR85 coding upstream 385420 526951 ~ 537487 (+)
CI01000335_00489106_00492720 NA coding upstream 422105 488688 ~ 492973 (+)
CI01000335_00988268_00990978 NA coding downstream 32753 988268 ~ 991337 (+)
CI01000335_01029328_01043603 NA coding downstream 73813 1029328 ~ 1043603 (+)
CI01000335_01055918_01061590 TNNT2D, TNNT2E coding downstream 100403 1055918 ~ 1061716 (+)
CI01000335_01109924_01114152 ELK3 coding downstream 154409 1109924 ~ 1114152 (+)
G477679 NA non-coding upstream 2672 912186 ~ 912406 (+)
G477669 NA non-coding upstream 10625 904228 ~ 904453 (+)
G477668 NA non-coding upstream 10936 903923 ~ 904142 (+)
G477660 NA non-coding upstream 24003 890849 ~ 891075 (+)
G477511 NA non-coding upstream 34047 863693 ~ 881031 (+)
G477702 NA non-coding downstream 4724 960239 ~ 960575 (+)
G477703 NA non-coding downstream 5179 960694 ~ 960936 (+)
G477706 NA non-coding downstream 11209 966724 ~ 967136 (+)
G477711 NA non-coding downstream 18402 973917 ~ 974202 (+)
G477714 NA non-coding downstream 116062 1071577 ~ 1074461 (+)
G477502 NA other upstream 360445 549522 ~ 554633 (+)

Expression


Co-expression Network