Gene
RNA
| Item | Value |
|---|---|
| gene id | G477706 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000335 |
| NCBI id | null |
| chromosome length | 1176510 |
| location | 966724 ~ 967136 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU548163 | True | 413 | lncRNA | 0.40 | 1 | 966724 | 967136 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000335_00930276_00934328 | NA | coding | upstream | 30344 | 930276 ~ 936380 (+) |
| CI01000335_00884515_00888701 | NA | coding | upstream | 77893 | 884338 ~ 888831 (+) |
| CI01000335_00681430_00741137 | DOCK4B, DOCK4 | coding | upstream | 225502 | 681430 ~ 741222 (+) |
| CI01000335_00586957_00597421 | TMEM168A | coding | upstream | 368616 | 586957 ~ 598108 (+) |
| CI01000335_00526951_00528066 | GPR85.L, GPR85 | coding | upstream | 437066 | 526951 ~ 537487 (+) |
| CI01000335_00988268_00990978 | NA | coding | downstream | 21132 | 988268 ~ 991337 (+) |
| CI01000335_01029328_01043603 | NA | coding | downstream | 62192 | 1029328 ~ 1043603 (+) |
| CI01000335_01055918_01061590 | TNNT2D, TNNT2E | coding | downstream | 88782 | 1055918 ~ 1061716 (+) |
| CI01000335_01109924_01114152 | ELK3 | coding | downstream | 142788 | 1109924 ~ 1114152 (+) |
| G477703 | NA | non-coding | upstream | 5788 | 960694 ~ 960936 (+) |
| G477702 | NA | non-coding | upstream | 6149 | 960239 ~ 960575 (+) |
| G477681 | NA | non-coding | upstream | 11209 | 915078 ~ 955515 (+) |
| G477679 | NA | non-coding | upstream | 54318 | 912186 ~ 912406 (+) |
| G477669 | NA | non-coding | upstream | 62271 | 904228 ~ 904453 (+) |
| G477711 | NA | non-coding | downstream | 6781 | 973917 ~ 974202 (+) |
| G477714 | NA | non-coding | downstream | 104441 | 1071577 ~ 1074461 (+) |
| G477504 | NA | non-coding | downstream | 109131 | 1076267 ~ 1078026 (+) |
| G477496 | NA | non-coding | downstream | 115279 | 1082415 ~ 1083264 (+) |
| G477517 | NA | non-coding | downstream | 158867 | 1126003 ~ 1129011 (+) |
| G477502 | NA | other | upstream | 412091 | 549522 ~ 554633 (+) |
