G477711


Basic Information

Item Value
gene id G477711
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 973917 ~ 974202 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU548171
AAACACTTTATATGATGAACAGATTGAATTTAGGCTTTTATTCACATAAACACTGATCAGCGAACATAAACAAAAGCTCAACCGAACCTGCTTCATGTGTGAGAACAAACCTCTTTCAGAAGTTCAAACATGCTGCATAAACACGAGAAAGAACCTCACTGGTTCTTGCAGAAGCTCAAACGTGCTGCAAAACAAACAAGAATGAACCTCATAGGTTCTCGCACATCAAGCGAACATGCTTGAGCTTCCGTTTACACAACTGATGTGTGAGCTGATGAATGTTTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU548171 True 286 lncRNA 0.39 1 973917 974202

Neighbor

gene id symbol gene type direction distance location
CI01000335_00930276_00934328 NA coding upstream 37537 930276 ~ 936380 (+)
CI01000335_00884515_00888701 NA coding upstream 85086 884338 ~ 888831 (+)
CI01000335_00681430_00741137 DOCK4B, DOCK4 coding upstream 232695 681430 ~ 741222 (+)
CI01000335_00586957_00597421 TMEM168A coding upstream 375809 586957 ~ 598108 (+)
CI01000335_00526951_00528066 GPR85.L, GPR85 coding upstream 444259 526951 ~ 537487 (+)
CI01000335_00988268_00990978 NA coding downstream 14066 988268 ~ 991337 (+)
CI01000335_01029328_01043603 NA coding downstream 55126 1029328 ~ 1043603 (+)
CI01000335_01055918_01061590 TNNT2D, TNNT2E coding downstream 81716 1055918 ~ 1061716 (+)
CI01000335_01109924_01114152 ELK3 coding downstream 135722 1109924 ~ 1114152 (+)
G477706 NA non-coding upstream 6781 966724 ~ 967136 (+)
G477703 NA non-coding upstream 12981 960694 ~ 960936 (+)
G477702 NA non-coding upstream 13342 960239 ~ 960575 (+)
G477681 NA non-coding upstream 18402 915078 ~ 955515 (+)
G477679 NA non-coding upstream 61511 912186 ~ 912406 (+)
G477714 NA non-coding downstream 97375 1071577 ~ 1074461 (+)
G477504 NA non-coding downstream 102065 1076267 ~ 1078026 (+)
G477496 NA non-coding downstream 108213 1082415 ~ 1083264 (+)
G477517 NA non-coding downstream 151801 1126003 ~ 1129011 (+)
G477502 NA other upstream 419284 549522 ~ 554633 (+)

Expression


Co-expression Network