XLOC_013419 (tmem170a)


Basic Information

Item Value
gene id XLOC_013419
gene name tmem170a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 22405707 ~ 22414565 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026503
CCAACAACAGTAGTGGTGGATAAAACCATCATTCATATCGATTTTTGATCGGTGTTGCAGATCGTCTGTAGATTAATAGTGCTTTTAGCTAAATGACAGCAAATCCGCACAGTCATCGGCTTTTGCGGTTTGAAACGAGCTTCTTGCAGATGGACGAGCATCTGTGCTAAAAACAAACGCTCCGCTAAAGCCCACCTTCCCTTTCTAATGCTGTTATTCGGCTTTGATACTTCTGTTACGGATGATCGAAGCGTTGATCGTTGGAGAAATGCAGGACGTGCAGATTGGATTCGTCAAGCAGATCCTCAGTTTGAATTTGGTGCCCAGGTCTAATAACACCACCTGCGGGAACAACACCTCTCTGTGCGACTTCTCGGAGATGTGGTATGGCGTGTTCCTGTGGGCCGTCGTCTCCTCATTGATTTTCCACCTGCCTGCTGCCCTCCTGGCTTTGGCAACCCTCCGCAGGCATAAGGTGGCACGATTTTTTCCACTCGGTATCCTGCTCATGGGCATCATCGGCCCGCTGTTCGGAGGCGTTCTTACTAGTGCAGCCATAGCAGGAGTCTATAAGGCGGCAGGGAAGAGCATGTTCTCCTTGGAGGCCTTGGTGTTTGGCGTGGGACAGTCTCTGTTTATTTTCATCATATCTTTCCTCAGAATTCTGGCTACCCTGTAGCACTGAGAGAGAGACACTGGCACATCAGGCTGCCGTTTCTTCACCTGGGCATCATATGCAAAACATGGAGGCCTTACTTCCTCGACAACTCCTTTTCCTTTGATACAGAACAGTATTTTTCTTTCCAAACGGGTTCCGGATGGAAGACTTTTCATTTGAAAAATGAATCAGTATGAGCAACCTTTAAAGCAACGCTAGCCTTGCGTGACAGGTGGAGTCATCTTGCACATGTGTAtatttttggttgttgttgtatTCATCATTATAGTTTCTTTTCGTTTTCCTTTCGAAATCTTTTATAAACTTTaaaatgaggtaaaaaaaaaatgtacatactaAAAAGCCCATTCAAGCTTGCCCTTAATTAATGCTTGACAATAACATCTTGCATTCACTTTGCACTGATTATATAAATCCTTTAGGCCAAAGgctcaaatagattttttttgccCCTGATTGTGGGCATATTTGAAGAGATTACAATTGAACACTTGTTGTTGGACTTTGACATTGTAATCATTTCACAGCATACACTTTCTTACTGGAGTTAAGTGGCTTTTGTTGGTTAAATAGCGTAtttgtgacctttttttttttttttttttttttttgcattcagcgTCATTAAGGATTTGTTTTTCATGTGGGCTCCAGGATTTGGCcttcatatttttatttctgtataaaTTAGAGTGATCTATGTTGCTTTGACAAATACTTGCCCATACGATTCTATATGTGGCAGCCTCACCTTTATGCCTAATATGTGAATGTAAAGCAGATTTCAGCTGAATCCATATTAGAATCACTTAAATCTTCACCAAAGAAATGGTAACACTAGTCTACAGCTGTTATGCGTTTCatactgttatttttaatattcctGTAGAGAAAGCTCATGTTAAAAAACTACAGAATGTACAAAACTACACCCAAACCTATGTATAGAAGAATATAACATTGGATACTCACACGTGTAGATGTCCTCCCTTCATGTTCAGCATCAGCACTTACAGTGTATATGGCTGAAAGGGATCAGAATATCATTTTTAATACACAGTAGCAGAGATTTTAGACTTATTTGGGGAAATAAACCAACCGTCTCAGATATCAGTCAGTTTAAGCATTTGTAGATTTGTGTTCTCCCATATTGCAAGCCCTCAGGAAGTTTTCGTGGTCTGGAAGTGTCATTTAAAGCTCGTTTGGTGTGAGTTCATGTAAATCAGACTGATCTTTTATGAGTGGAGCGCTAATGTTAATGGGACGCACTGAAAGCTATGCTTTATTTGCCTGAGCCTATGGTCTCTCAATTGCACAAATGGATTTATTTTTCTAAAGTCCAATCATTGGTGGTGGAGTGACTGCTCTTTGGTTCTTTTGTGGTTTGTCTTTGATTGTACTGTCTTTGATTCTTGAGAATTGGATTTACTCTTTGCGATATGAtactttccatttatttatttttttctgggcAAGTTTAATTTTCTTACTGTATAATAAGTGCCAATTGCTAGTATTTTCATGAAATAAAATGGTTTAACTTTAGATTATTATAA

Function

symbol description
tmem170a Predicted to be involved in endoplasmic reticulum tubular network organization. Predicted to be located in endoplasmic reticulum membrane and nuclear envelope. Orthologous to human TMEM170A (transmembrane protein 170A).

GO:

id name namespace
GO:0071786 endoplasmic reticulum tubular network organization biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1622 Predicted to be involved in endoplasmic reticulum tubular network organization. Predicted to be located in endoplasmic reticulum membrane and nuclear envelope. Orthologous to human TMEM170A (transmembrane protein 170A).

Ensembl:

ensembl_id ENSDARG00000056628

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026503 True 2235 mRNA 0.39 3 22405707 22414565

Neighbor

gene id symbol gene type direction distance location
XLOC_013418 si:dkey-45h7.1 coding downstream 255044 22149561 ~ 22150663 (-)
XLOC_013416 pard6a coding downstream 311605 22028674 ~ 22094102 (-)
XLOC_013417 CT573204.2 coding downstream 321821 22083772 ~ 22083886 (-)
XLOC_013415 tsnaxip1 coding downstream 454956 21931741 ~ 21950751 (-)
XLOC_013414 nutf2 coding downstream 476256 21913685 ~ 21929451 (-)
XLOC_013420 CR933017.1 coding upstream 136030 22550595 ~ 22552314 (-)
XLOC_013421 si:dkey-11d18.4 coding upstream 280842 22695407 ~ 22696357 (-)
XLOC_013422 si:ch73-113g13.3 coding upstream 286465 22701030 ~ 22701983 (-)
XLOC_013423 si:ch73-113g13.2 coding upstream 298073 22712638 ~ 22713621 (-)
XLOC_013424 si:ch73-113g13.1 coding upstream 302143 22716708 ~ 22717673 (-)
XLOC_013384 BX323829.1 misc downstream 2863476 19542102 ~ 19542231 (-)
XLOC_013411 BX548157.1 non-coding downstream 685656 21712296 ~ 21720051 (-)
XLOC_013398 BX470160.1 non-coding downstream 1559394 20846190 ~ 20846313 (-)
XLOC_013395 BX470130.1 non-coding downstream 1771784 20633789 ~ 20633923 (-)
XLOC_013388 NA non-coding downstream 2085834 20285665 ~ 20319873 (-)
XLOC_013426 BX088710.1 non-coding upstream 325167 22739732 ~ 22753637 (-)
XLOC_013427 BX663522.1 non-coding upstream 444914 22859479 ~ 22862467 (-)
XLOC_013428 NA non-coding upstream 772164 23186729 ~ 23195554 (-)
XLOC_013429 NA non-coding upstream 986565 23401130 ~ 23403453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_02859975_02863496 TMEM170A coding CI01000013 null 2859975 ~ 2863946 (+)