G477714


Basic Information

Item Value
gene id G477714
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000335
NCBI id null
chromosome length 1176510
location 1071577 ~ 1074461 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU548174
TCGGAGTGCAAAGTGCAAACGATGTCGAACCCGTAAAATGTGGGAGTTTAACATAGCATAAAACATAACAAACATAACGTTTAGCAATTAGCATAACTACAGGAAATGCTGTCATGCAGGGCCACCAACTCTCATTCAAACTCACTGTTTTCACGCCACACGTCCATTTTCTCACGCAGTGAAAGATACATAGCAGAGCAAAGAGGACACAAACAACACGCCGACAGATGAGACAGATCAGGCTCTCTTCATTGTGACGCTGCTCTCTAGTGACACACCTGGAATATGAACCATCAGCAGAATAAGGGATGTTTGGACACCCGGTCATCAGAAGCAGAGCTGTAGGAAGTGTGGACAGACATTGACTGTAATGATGGACTTTTGCTGATGGACAGGTAATTTATTTATTTATTTATTTATTTTTTGCAGCTAATTTAAAAATTTTCAGGCATAACCACTGCTGGACGTCGTGCCGGGATTAATGGGGGGACCCGACTCACCCCCGCCCCTTCATGCACACACCATTCACTCATATTGTGGAGATGTATGAAAGTAATTTAATAGCATCATC
>TU548175
TCGGAGTGCAAAGTGCAAACGATGTCGAACCCGTAAAATGCTCTCTTCATTGTGACGCTGCTCTCTAGTGACACACCTGGAATATGAACCATCAGCAGAATAAGGGATGTTTGGACACCCGGTCATCAGAAGCAGAGCTGTAGGAAGTGTGGACAGACATTGACTGTAATGATGGACTTTTGCTGATGGACAGGTAATTTATTTATTTATTTATTTATTTTTTGCAGCTAATTTAAAAATTTTCAGGCATAACCACTGCTGGACGTCGTGCCGGGATTAATGGGGGGACCCGACTCACCCCCGCCCCTTCATGCACACACCATTCACTCATATTGTGGAGATGTATGAAAGTAATTTAATAGCATCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU548174 False 571 lncRNA 0.43 3 1071577 1074461
TU548175 True 369 lncRNA 0.43 3 1071577 1074461

Neighbor

gene id symbol gene type direction distance location
CI01000335_01055918_01061590 TNNT2D, TNNT2E coding upstream 9861 1055918 ~ 1061716 (+)
CI01000335_01029328_01043603 NA coding upstream 27974 1029328 ~ 1043603 (+)
CI01000335_00988268_00990978 NA coding upstream 80240 988268 ~ 991337 (+)
CI01000335_00930276_00934328 NA coding upstream 135197 930276 ~ 936380 (+)
CI01000335_00884515_00888701 NA coding upstream 182746 884338 ~ 888831 (+)
CI01000335_01109924_01114152 ELK3 coding downstream 35463 1109924 ~ 1114152 (+)
G477711 NA non-coding upstream 97375 973917 ~ 974202 (+)
G477706 NA non-coding upstream 104441 966724 ~ 967136 (+)
G477703 NA non-coding upstream 110641 960694 ~ 960936 (+)
G477702 NA non-coding upstream 111002 960239 ~ 960575 (+)
G477681 NA non-coding upstream 116062 915078 ~ 955515 (+)
G477504 NA non-coding downstream 1806 1076267 ~ 1078026 (+)
G477496 NA non-coding downstream 7954 1082415 ~ 1083264 (+)
G477517 NA non-coding downstream 51542 1126003 ~ 1129011 (+)
G477502 NA other upstream 516944 549522 ~ 554633 (+)

Expression


Co-expression Network