XLOC_013420 (CR933017.1)


Basic Information

Item Value
gene id XLOC_013420
gene name CR933017.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 22550595 ~ 22552314 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026504
CTGGAGTTAAATTTTTAGAAAGTCCGCCATTACACAACTCTGCCGAGCAGCACATGAGAACTGGAGTTATGTTCTTCTTTGTGAGAAGTGGTAGGCCTACTTGATCAGATGGAGAAACCTGCTGTTCACATTTCAAATAGGCTAACTTACACAACGAGGCCACGATGCTGATAAAAGTGCAATTTGGAggcaagaaaaaatatattaaactggaAGAAGATTGTTTCTTGGATTTTTTCAGTGCGGTCCAGCACAAGTTTGTGATACCAGAGGATACAGCATCGAAAGTCACAGATGACCATGGCATAGAGGTGGATGAGGATGTATTTCAAGAACTTGCAACAACCAAAGAAACATGTCATCCATACTAATGATGATTTGACTGTCCTGCAGCAAGGGGCTGTTAAAGTGCCCTCCTCCCCAAGTATGACAGATACATTGTCTGTGTCAAGCAGTTTGAGCAGCAGTGATTCTGGATCTCAAATTATTCAACCTTTAATGGGCAGTGtccaaaaaaatAAAATCGAGCAAATTCTAACTTCAAAGCCAGCAGAGTTGACTGTGATTGAGGAGtatgacaagatatttttttactgcttttGATTCCTgtgaagttaattttatataatgtaatgtgttgATTGTCTCATGCAATTTTACTAAGTCATTGGTTTTAGTTGGCACTAGCTGCTAACATAtattaattgtaaatgttttgctGTTAGATTTAATGCTTTGATGACAATTAATTTCAAAGTGTGTACATCGATGGAAATTCTAAATCTAATGTGTGGATTTGCATGAATAAAAGCAGTAAGTAAA
>TCONS_00027296
GCTGTGTTGTATTTTGGAGTTCATTCTCTGGTGTTCAGAAACGTGCTTTAACTCCTTACTGGAGTTAAATTTTTAGAAAGTCCGCCATTACACAACTCTGCCGAGCAGCACATGAGAACTGGAGTTATGTTCTTCTTTGTGAGGTAGGTAAAAGTGCATTGTTATACAATTCTAAAAGCTTTTTCTAAATGTTGGATGTTTTGTAGCAGAAGTGTGTTTTGCTGTAGCTGTTTCATTTTGTACTGTGAGGCTAGTGACTGCATGTGGCTAACTTAGCATAGCATGTTAGCTTTTCCAATGtggcagttttaaaaaaaaaaaaaaatgttgtggatTTGAACAAGCTAACACTAGCTAATAATCTTTTCTTCCCCTGTGTTTCTAAAAATATGTGTTCTGCTGTCAAAAAGAAGTGGTAGGCCTACTTGATCAGATGGAGAAACCTGCTGTTCACATTTCAAATAGGCTAACTTACACAACGAGGTAATGTCAATATCTTTTATCCAGCAATAGAGCTTTATGTCTGTAAGATTTAATATGTGTAATATTGCTCATGAAATGTTTTGGATTGTATCATGATTTAGTCGTGACCGTGAGAGTATGCTGTTTTcagctatatttacattacattttcaatCACACTAACATAAGTTGTTAAATAACATTTATCTTTTTAATTTCAGGCCACGATGCTGATAAAAGTGCAATTTGGAggcaagaaaaaatatattaaactggaAGAAGATTGTTTCTTGGATTTTTTCAGTGCGGGTGAGTTTTAGTgtaacagagttttttttttttattataataataataacagtcattttgaaatttatttgataaattataCATTGTTGTTATGTTGTAGTCCAGCACAAGTTTGTGATACCAGAGGATACAGCATCGAAAGTCACAGATGACCATGGCATAGAGGTGGATGAGGATGTATTTCAAGAACTTGCAACAACCAAAGAAACATGTCATCCATACTAATGATGGTAGgttatttaagaacatttttataaattttgaaaGTTGGTCTCATGACTCAAAGTGAAAGTGtgcatttgttgttttttcatcagATTTGACTGTCCTGCAGCAAGGGGCTGTTAAAGTGCCCTCCTCCCCAAGTATGACAGATACATTGTCTGTGTCAAGCAGTTTGAGCAGCAGTGATTCTGGATCTCAAATTATTCAACCTTTAATGGGCAGTGtccaaaaaaatgtaagtttttttttaaacttccatATACATAGAAATTATACcgtaaacattacaaaataacgttacaaaatgaatgcattttaaagtaaaacatagtataaacacagttattagatttagttttttttgttaaaaaaaatgttaattttggttATCtttctaaatacttttttttcttcgtttcagAAAATCGAGCAAATTCTAACTTCAAAGCCAGCAGAGTTGACTGTGATTGAGGAGtatgacaagatatttttttactgcttttGATTCCTgtgaagttaattttatataatgtaatgtgttgATTGTCTCATGCAATTTTACTAAGTCATTGGTTTTAGTTGGCACTAGCTGCTAACATAtattaattgtaaatgttttgctGTTAGATTTAATGCTTTGATGACAATTAATTTCAAAGTGTGTACATCGATGGAAATTCTAAATCTAATGTGTGGATTTGCATGAATAAAAGCAGTAAGTAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094495

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026504 False 822 processed_transcript 0.37 6 22550595 22552256
TCONS_00027296 True 1720 lncRNA 0.32 1 22550595 22552314

Neighbor

gene id symbol gene type direction distance location
XLOC_013419 tmem170a coding downstream 136030 22405707 ~ 22414565 (-)
XLOC_013418 si:dkey-45h7.1 coding downstream 399932 22149561 ~ 22150663 (-)
XLOC_013416 pard6a coding downstream 456493 22028674 ~ 22094102 (-)
XLOC_013417 CT573204.2 coding downstream 466709 22083772 ~ 22083886 (-)
XLOC_013415 tsnaxip1 coding downstream 599844 21931741 ~ 21950751 (-)
XLOC_013421 si:dkey-11d18.4 coding upstream 143093 22695407 ~ 22696357 (-)
XLOC_013422 si:ch73-113g13.3 coding upstream 148716 22701030 ~ 22701983 (-)
XLOC_013423 si:ch73-113g13.2 coding upstream 160324 22712638 ~ 22713621 (-)
XLOC_013424 si:ch73-113g13.1 coding upstream 164394 22716708 ~ 22717673 (-)
XLOC_013425 nudt21 coding upstream 169237 22721551 ~ 22735002 (-)
XLOC_013384 BX323829.1 misc downstream 3008364 19542102 ~ 19542231 (-)
XLOC_013411 BX548157.1 non-coding downstream 830544 21712296 ~ 21720051 (-)
XLOC_013398 BX470160.1 non-coding downstream 1704282 20846190 ~ 20846313 (-)
XLOC_013395 BX470130.1 non-coding downstream 1916672 20633789 ~ 20633923 (-)
XLOC_013388 NA non-coding downstream 2230722 20285665 ~ 20319873 (-)
XLOC_013426 BX088710.1 non-coding upstream 187418 22739732 ~ 22753637 (-)
XLOC_013427 BX663522.1 non-coding upstream 307165 22859479 ~ 22862467 (-)
XLOC_013428 NA non-coding upstream 634415 23186729 ~ 23195554 (-)
XLOC_013429 NA non-coding upstream 848816 23401130 ~ 23403453 (-)
XLOC_013430 NA non-coding upstream 887148 23439462 ~ 23608028 (-)

Expression


Co-expression Network