XLOC_013422 (si:ch73-113g13.3)


Basic Information

Item Value
gene id XLOC_013422
gene name si:ch73-113g13.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 22701030 ~ 22701983 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026507
ATGGATTTAGAATTAAGCTTCAATTCAACATCTAACAGCACTGCTGTGGGTTCAGAGAAGATCGCTCCTGCTGTGGTTCTGGGTTTGTGTTGTTTAGTGGGTTTGCCGAGCAACATTGCAGTAATCGTCAGCATTGCTCGTGAGTGGAACACAAATCTGAGCTTCACCTTAAAACTGATGCTCAACCTCGCGGTCTCTGATGCTTTGAGTCTTTGCTTGGCTCCTTTTGTGATGTTTGGAATATGGTTTGGATGGAAATTCGGCCTGTGGGTTTGTAGGATCCTGCTCTTCATCGGTCACTGGAGCCTGTATGTTGGTGTCCTGACGGTGACGTCCATGAGTGTGCACCGCTATCACAATGTCATCAAGTCAAGGGTTGCTAACAGGATGATTTTGCAAAGGCTGGAACGACGACACAGACACCTTCAGCTGATCTGCATCTGGACTCTCGCCTTTGTTTTTGCCCTACCAGTGTTTTTCACCCAAGGACTAAAAGAAAAGAATGGCTTGCAAAGATGTCAGAGGACAGTGAGCTCACAGTTTGTGGCAGtggctcttcttcttcttcagatATTGTTGGGGTTTATTATTCCATTTTTAATAATGTTGACATTTTATCTGTGGTTGCACAAAGGTTTGCGTCAAACCTCCAGGTTAGCTCCACAGGAGCAGGAATCTAGAAACAAGGGGTCAAACGTTAGAACTTACAAAAAAAGACTTGTGATCAGCGTCGTTGTGGCTTTCTTTCTGTTTTGGACTCCTGTGCACATCATCAATGTCATTGACATTGTCGCTACTTTGACTAAAACATCTCATCAAGATGTTTATTCACGTCTAAAGTCTTTCCGTCGTGTTTATGGTGACACAAGCAAGGCTCTCGCTTTACTAAACTGCTGTTTAGATCCTTttctttatgtttttgttttaaggaAGGTTATAAAGTGTACGAAGTAG
>TCONS_00026508
AACCTCGCGGTCTCTGATGCTTTGAGTCTTTGCTTGGCTCCTTTTGTGATGTTTGGAATATGGTTTGGATGGAAATTCGGCCTGTGGGTTTGTAGGATCCTGCTCTTCATCGGTCACTGGAGCCTGTATGTTGGTGTCCTGACGGTGACGTCCATGAGTGTGCACCGCTATCACAATGTCATCAAGTCAAGGGTTGCTAACAGGATGATTTTGCAAAGGCTGGAACGACGACACAGACACCTTCAGCTGATCTGCATCTGGACTCTCGCCTTTGTTTTTGCCCTACCAGTGTTTTTCACCCAAGGACTAAAAGAAAAGAATGGCTTGCAAAGATGTCAGAGGACAGTGAGCTCACAGTTTGTGGCAGtggctcttcttcttcttcagatATTGTTGGGGTTTATTATTCCATTTTTAATAATGTTGACATTTTATCTGTGGTTGCACAAAGGTTTGCGTCAAACCTCCAGGTTAGCTCCACAGGAGCAGGAATCTAGAAACAAGGGGTCAAACGTTAGAACTTACAAAAAAAGACTTGTGATCAGCGTCGTTGTGGCTTTCTTTCTGTTTTGGACTCCTGTGCACATCATCAATGTCATTGACATTGTCGCTACTTTGACTAAAACATCTCATCAAGATGTTTATTCACGTCTAAAGTCTTTCCGTCGTGTTTATGGTGACACAAGCAAGGCTCTCGCTTTACTAAACTGCTGTTTAGATCCTTttctttat

Function

symbol description
si:ch73-113g13.3 Predicted to enable G protein-coupled receptor activity and neuropeptide binding activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094601

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026507 False 954 mRNA 0.43 1 22701030 22701983
TCONS_00026508 True 732 mRNA 0.44 1 22701069 22701800

Neighbor

gene id symbol gene type direction distance location
XLOC_013421 si:dkey-11d18.4 coding downstream 4673 22695407 ~ 22696357 (-)
XLOC_013420 CR933017.1 coding downstream 148716 22550595 ~ 22552314 (-)
XLOC_013419 tmem170a coding downstream 286465 22405707 ~ 22414565 (-)
XLOC_013418 si:dkey-45h7.1 coding downstream 550367 22149561 ~ 22150663 (-)
XLOC_013416 pard6a coding downstream 606928 22028674 ~ 22094102 (-)
XLOC_013423 si:ch73-113g13.2 coding upstream 10655 22712638 ~ 22713621 (-)
XLOC_013424 si:ch73-113g13.1 coding upstream 14725 22716708 ~ 22717673 (-)
XLOC_013425 nudt21 coding upstream 19568 22721551 ~ 22735002 (-)
XLOC_013426 BX088710.1 coding upstream 37749 22739732 ~ 22753637 (-)
XLOC_013427 BX663522.1 coding upstream 157496 22859479 ~ 22862467 (-)
XLOC_013384 BX323829.1 misc downstream 3158799 19542102 ~ 19542231 (-)
XLOC_013417 CT573204.2 non-coding downstream 617144 22083772 ~ 22083886 (-)
XLOC_013411 BX548157.1 non-coding downstream 980979 21712296 ~ 21720051 (-)
XLOC_013398 BX470160.1 non-coding downstream 1854717 20846190 ~ 20846313 (-)
XLOC_013395 BX470130.1 non-coding downstream 2067107 20633789 ~ 20633923 (-)
XLOC_013428 NA non-coding upstream 484746 23186729 ~ 23195554 (-)
XLOC_013429 NA non-coding upstream 699147 23401130 ~ 23403453 (-)
XLOC_013430 NA non-coding upstream 737479 23439462 ~ 23608028 (-)

Expression


Co-expression Network