XLOC_013425 (nudt21)


Basic Information

Item Value
gene id XLOC_013425
gene name nudt21
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 22721551 ~ 22735002 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026512
GGAAGTAACCCAATGTCCCGGATGTGCTTTCACAGCAGAGCGCCGTATTCCAGTTTTCATCGAGCGCCAAGGCTGTGCAATTCAATCACAGTAATAAAGTAATCAACGTGGAAAAAAACGCGATTAGTGCAAATATTAGGAAGTGATTTAATAATCCGTCATACGATGTCAGTTGTACCTCCTAATCGATCATCTACCGGTTGGCCTCGAGGAGTAAATCAGTTCGGCAATAAATACATTACCCAGGCGACTAAACCCCTCACCCTGGAGAGAACAATCAACCTATACCCTCTTACAAATTACACATTCGGCACCAAGGAGCCGCTCTATGAGAAGGACAGCTCGGTAGCCGCACGCTTTCAGCGGATGCGGGAAGAATTTGAGAAAATCGGGATGCGGCGGACTGTGGAGGGTGTTCTGATCGTGCACGAGCACAGACTCCCTCATGTTCTGCTACTTCAGCTGGGGACAACCTTCTTCAAACTcCCTGGAGGCGAGTTGAACCCTGGAGAGGATGAGGTGGAGGGGTTGAAGCGACTAATGACAGAGATTTTGGGACGCCAGGATGGGGTGAAACAGGACTGGGTCATTGATGACTGCATTGGGAACTGGTGGAGACCAAACTTTGAACCACCTCAGTACCCTTATATTCCAGCACACATCACTAAACCTAAAGAACACAAGAAGCTTTTCCTAGTACAGCTGCAAGAAAAAGCATTGTTTGCCGTGCCAAAGAACTACAAACTGGTGGCTGCTCCGTTGTTTGAGCTTTATGATAATGCTCCTGGTTATGGCCCAATTATATCCAGTCTTCCACAGCTACTGAGCAGGTTTAACTTCATCTACAATTGAGAAGCTGAAAGTTTTGTCATGAAGCTGTCTCTGTGAGCGCAGCTTGATGATGGTTGAAGTGTTTGGCTGACGGCGAGGTCCATTGAGGTTTCCGGAATCTCTCAGCTGGCCTGTTTTCATTACATTGATTTGGATTGCATAGAAATGTGTGGATTATTGTTTTTCTCATTTATAGCTACATTGCAAGTCCCTGTTATTGAACTTTGTCATAAAGTAACTACATTTTTATGTTTGACTAAGTGGTGAATACAgtgtctttagaaaaaaaaatgttccagtgacttttttttttttttttttaaaccttgtaTATTTGTCCGTGCTTTTTATAATAAATGGTTCTCTTGGA

Function

symbol description
nudt21 Predicted to enable identical protein binding activity and mRNA 3'-UTR AU-rich region binding activity. Predicted to be involved in several processes, including positive regulation of cell differentiation; protein-containing complex assembly; and regulation of mRNA metabolic process. Predicted to act upstream of or within cell differentiation and mRNA polyadenylation. Predicted to be located in cytoplasm and paraspeckles. Predicted to be part of mRNA cleavage factor complex. Orthologous to human NUDT21 (nudix hydrolase 21).

GO:

id name namespace
GO:0010608 posttranscriptional regulation of gene expression biological_process
GO:0110104 mRNA alternative polyadenylation biological_process
GO:2000975 positive regulation of pro-B cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0006378 mRNA polyadenylation biological_process
GO:2000738 positive regulation of stem cell differentiation biological_process
GO:1990120 messenger ribonucleoprotein complex assembly biological_process
GO:0006397 mRNA processing biological_process
GO:0051290 protein heterotetramerization biological_process
GO:1900365 positive regulation of mRNA polyadenylation biological_process
GO:0031439 positive regulation of mRNA cleavage biological_process
GO:0042382 paraspeckles cellular_component
GO:0005849 mRNA cleavage factor complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017091 AU-rich element binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0042802 identical protein binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0035925 mRNA 3'-UTR AU-rich region binding molecular_function

KEGG:

id description
ko03015 mRNA surveillance pathway
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040426-1316 Predicted to enable identical protein binding activity and mRNA 3'-UTR AU-rich region binding activity. Predicted to be involved in several processes, including positive regulation of cell differentiation; protein-containing complex assembly; and regulation of mRNA metabolic process. Predicted to act upstream of or within cell differentiation and mRNA polyadenylation. Predicted to be located in cytoplasm and paraspeckles. Predicted to be part of mRNA cleavage factor complex. Orthologous to human NUDT21 (nudix hydrolase 21).

Ensembl:

ensembl_id ENSDARG00000003153

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026512 True 1201 mRNA 0.44 7 22721551 22735002

Neighbor

gene id symbol gene type direction distance location
XLOC_013424 si:ch73-113g13.1 coding downstream 3878 22716708 ~ 22717673 (-)
XLOC_013423 si:ch73-113g13.2 coding downstream 7930 22712638 ~ 22713621 (-)
XLOC_013422 si:ch73-113g13.3 coding downstream 19568 22701030 ~ 22701983 (-)
XLOC_013421 si:dkey-11d18.4 coding downstream 25194 22695407 ~ 22696357 (-)
XLOC_013420 CR933017.1 coding downstream 169237 22550595 ~ 22552314 (-)
XLOC_013426 BX088710.1 coding upstream 4730 22739732 ~ 22753637 (-)
XLOC_013427 BX663522.1 coding upstream 124477 22859479 ~ 22862467 (-)
XLOC_013428 NA coding upstream 451727 23186729 ~ 23195554 (-)
XLOC_013429 NA coding upstream 666128 23401130 ~ 23403453 (-)
XLOC_013430 NA coding upstream 704460 23439462 ~ 23608028 (-)
XLOC_013384 BX323829.1 misc downstream 3179320 19542102 ~ 19542231 (-)
XLOC_013417 CT573204.2 non-coding downstream 637665 22083772 ~ 22083886 (-)
XLOC_013411 BX548157.1 non-coding downstream 1001500 21712296 ~ 21720051 (-)
XLOC_013398 BX470160.1 non-coding downstream 1875238 20846190 ~ 20846313 (-)
XLOC_013395 BX470130.1 non-coding downstream 2087628 20633789 ~ 20633923 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_02666598_02669821 NUDT21, CPSF5, NUDT21.L coding CI01000013 null 2666598 ~ 2669821 (+)