XLOC_013426 (BX088710.1)


Basic Information

Item Value
gene id XLOC_013426
gene name BX088710.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 22739732 ~ 22753637 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026513
GAACTGGCTAATGCCCTCATCCCTGCTGCTGTGTCCCAATACATGTTTCAGGGTCAGGAGGGAGAGCTGTACCCCACCGCTGGCTATGAAGAGCAGTAAAGCCCTGATGCGACAGCCAGCAGAGATCCCTCCTGAGAGACGAGCAGATTCACTTGAAAACATGGCACTTGGATTGTACAATATCCCAACAACAGAAGACTCCAATTTACCTGACACTTGCAGATGATATATTTAGTAAACTTATCAAGTGACCGGCCCTTCATGAAGACTCACAAGATGAAgcgtgtattttttttaaaaacatctaaagCACATCAATTCACTGAAGATGGAATATTTACAAAACCCCTTCTCAAGGAATTCAGGCTACATCAAGATCATTCTGAAGATATTTTTCCTACAATAAAATGCATCCCATGGACACACCTGTTGCCAAAGAAAAGGCAATACTGAGTATTTCCCTCCTTGACGACTACAATGCATGTGAACTGTTTGCGATATGACGTAATTGATCGTGGCACAAGTTTGAATGCACTTTAGTCTGTGTGTTGGAGTTCCTGCTTTGTGGAGCTGTGATTTCATTTTCCCTAAAATTGACATTATAATGAAGCACACGCTTGtatttcaatttatatatatatctatatttgaAGGCATATAAAAAGTACAGGTTTAATcatattatgtatgtatttacgTGAGAGGTCTAGGGGTTCAAAATCAGACCTCG
>TCONS_00026514
TGACTAGGCCAGAAAGGGAGCAAGAGGAGACGGAGAGAGGAACAGCTTCAGCAGCGCACATCCTAAGAGAACATCAATTTGGAAATGGACTAAAATACCACAGGATTAAGGAGACtcgtctgttcaagtccaagtgcAGTCATGCAGGAGAACCCAGGCTCTATAGGTGTGGATGGGGGATATGCTAGCAATGTGCCCGCTTTCCTCACTAAACTCTGGACTCTGGTCGAGGACCCGGAGACTAATCATCTGATCTGCTGGAGTGCTacCGGGACCAGCTTTCATGTTTTCGACCAAGGCAGATTTGCCAAGGAAGTTCTGCCCAAATACTTCAAACACAACAACATGGCGAGTTTCGTACGCCAGCTCAACATGTACGGCTTCAGAAAAGTGGTGAATATTGAGCAGAGTGGGCTGGTGAAGCCAGAGCGAGACGACACTGAGTTCCAGCACCTCTATTTTCTCCAGGGCCACGAGCATCTGCTGGAGCACATTAAACGCAAAGTGTCAATAGTAAAAAGCGAGGAGACTAAAGTGCGACAGGAGGACTTGAGTAagctgttgtatgaggtccaggtGTTGCGGAGCCAACAGGAAAACATGGAGATGCAGATGCAGGATATGAAACAGCAGAATGATGTTCTGTGGAGGGAAGTGGTGTCACTGAGACAGAATCACACACAGCAGCAGAAAGTCATGAACAAGCTGATTCAGTTCCTGTTCAGCCAGATGCAATCCAACTCTCCAAGCACTGTGGGAATGAAGAGAAAGCTTCCTCTGATGCTGGATGACGGCTGCTCCACCCCTCCTGCCTCCAAATTCAGCCATAACCACTCCATGGAGTCTTTACAGGAATCATTCTATATCCAATCGCCATCCACAGAAAGTGCTTCCTGCTCGACTAGCAGCGTGATGACAGGAGGGCCCATCATCTCAGATGTCACTGAAATCCCACAGTCCAGCTCCATGGCTTTACAAATGCAGGCAGAGGAATCAAGGGAAAAGTGTCTGATGCTAATTAAGGAGGAGCCGGTGAGTCCTGGGGTCCAGGGACGAGCAGAGGGTGTTCCACTCGGGTCTTGTGAAGTGTGTGCTGAACCCCCTGTCCTCCCTGTTGCCATGGTGCAGTCCGTCCTGGAGGGCCGAGGATCTAATTTGGGAGAGAGAAGGGCCAAAAGACCCATGCTGGAGAGACCAGAGATTCCTGATGGCGTGGAGAATGTTGACATGAGTCTGGAGGATTTACAGCTGCTTCTGAGGAGTCACCAGCAGAGCATGGAAAATAATGCTGCAGCAATGGATCAATTTACATTTAGTCTGCCTTTGAATGAGTGGAATTTCGCAGAAATGGACCCGAACCTGAAATCGGAACTGGCTAATGCCCTCATCCCTGCTGCTGTGTCCCAATACATGTTTCAGGGTCAGGAGGGAGAGCTGTACCCCACCGCTGGCTATGAAGAGCAGTAAAGCCCTGATGCGACAGCCAGCAGAGATCCCTCCTGAGAGACGAGCAGAAAGATTCACTTGAAAACATGGCACTTGGATTGTACAATATCCCAACAACAGAAGACTCCAATTTACCTGACACTTGCAGATGATATATTTAGTAAACTTATCAAGTGACCGGCCCTTCATGAAGACTCACAAGATGAAgcgtgtattttttttaaaaacatctaaagCACATCAATTCACTGAAGATGGAATATTTACAAAACCCCTTCTCAAGGAATTCAGGCTACATCAAGATCATTCTGAAGATATTTTTCCTACAATAAAATGCATCCCATGGACACACCTGTTGCCAAAGAAAAGGCAATACTGAGTATTTCCCTCCTTGACGACTACAATGCATGTGAACTGTTTGCGATATGACGTAATTGATCGTGGCACAAGTTTGAATGCACTTTAGTCTGTGTGTTGGAGTTCCTGCTTTGTGGAGCTGTGATTTCATTTTCCCTAAAATTGACATTATAATGAAGCACACGCTTGtatttcaatttatatatatatctatatttgaAGGCATATAAAAAGTACAGGTTTAATcatattatgtatgtatttacgTGAGAGGTCTAGGGGTTCAAAATCAGACCTCG
>TCONS_00026515
TGACTAGGCCAGAAAGGGAGCAAGAGGAGACGGAGAGAGGAACAGCTTCAGCAGCGCACATCCTAAGAGAACATCAATTTGGAAATGGACTAAAATACCACAGGATTAAGGAGACtcgtctgttcaagtccaagtgcAGTCATGCAGGAGAACCCAGGCTCTATAGGTGTGGATGGGGGATATGCTAGCAATGTGCCCGCTTTCCTCACTAAACTCTGGACTCTGGTCGAGGACCCGGAGACTAATCATCTGATCTGCTGGAGTGCTacCGGGACCAGCTTTCATGTTTTCGACCAAGGCAGATTTGCCAAGGAAGTTCTGCCCAAATACTTCAAACACAACAACATGGCGAGTTTCGTACGCCAGCTCAACATGTACGGCTTCAGAAAAGTGGTGAATATTGAGCAGAGTGGGCTGGTGAAGCCAGAGCGAGACGACACTGAGTTCCAGCACCTCTATTTTCTCCAGGGCCACGAGCATCTGCTGGAGCACATTAAACGCAAAGTGTCAATAGTAAAAAGCGAGGAGACTAAAGTGCGACAGGAGGACTTGAGTAagctgttgtatgaggtccaggtGTTGCGGAGCCAACAGGAAAACATGGAGATGCAGATGCAGGATATGAAACAGCAGAATGATGTTCTGTGGAGGGAAGTGGTGTCACTGAGACAGAATCACACACAGCAGCAGAAAGTCATGAACAAGCTGATTCAGTTCCTGTTCAGCCAGATGCAATCCAACTCTCCAAGCACTGTGGGAATGAAGAGAAAGCTTCCTCTGATGCTGGATGACGGCTGCTCCACCCCTCCTGCCTCCAAATTCAGCCATAACCACTCCATGGAGTCTTTACAGGAATCATTCTATATCCAATCGCCATCCACAGAAAGTGCTTCCTGCTCGACTAGCAGCGTGATGACAGGAGGGCCCATCATCTCAGATGTCACTGAAATCCCACAGTCCAGCTCCATGGCTTTACAAATGCAGGCAGAGGAATCAAGGTGAGTGGACAGAACTTGATGGGTGAACAAATTGTCTATTTACCAAACACAATTTTCAACACAGCTGTCTTTTGATGAGAAAAAAGtccaaacttttaaaaactgacTTTAAAGCTGTACACTTTTTAAAACGCTACTATAATTTCGAAACaacttttattttcatattaaaatgaacACTCCAATTATTTTTGGTCACCCAGATTTGAAAAGTTTAGTTTTACCAATTATGAATCCATTCAGCTAATCTCCCGGTGGGGCGagaccacttttagcttagcttagcataaagcatcagattagaccattagcagtGGCCCCCTGTTAATCGCAGGAGTTtcattctaaaaataacccgcaatagGTGAAATCCACGAAgttgtcagctttattttttacaattattataaatattttagggCTGTAAAACTCCTTACTACACaattttctcagacaggcattaaaatttttacaattttctgtcttgtttcaaCACTCGCATAACTTGTACATTCCTTAAAcatgtccagaagtccaactttttgtgtgATAGTTTGGATTTTTCTCTGCATTTTGATTGACAATTGTCTACAGCCAAGCAGGACGCAGAACTCAAttcgctgtaaaaaaaaaaaaaagaaaaaagaaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-18 Enables sequence-specific DNA binding activity. Involved in maintenance of lens transparency. Acts upstream of or within lens development in camera-type eye; positive regulation of deoxyribonuclease activity; and regulation of lens fiber cell differentiation. Predicted to be active in nucleus. Is expressed in eye; lens; and solid lens vesicle. Used to study cataract. Human ortholog(s) of this gene implicated in cataract and cataract 5 multiple types. Orthologous to human HSF4 (heat shock transcription factor 4).

Ensembl:

ensembl_id ENSDARG00000013251 ENSDARG00000092444

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026513 False 730 processed_transcript 0.40 2 22739732 22743366
TCONS_00026514 False 2102 mRNA 0.47 13 22739732 22753637
TCONS_00026515 True 1647 mRNA 0.43 8 22746506 22753637

Neighbor

gene id symbol gene type direction distance location
XLOC_013425 nudt21 coding downstream 4730 22721551 ~ 22735002 (-)
XLOC_013424 si:ch73-113g13.1 coding downstream 22059 22716708 ~ 22717673 (-)
XLOC_013423 si:ch73-113g13.2 coding downstream 26111 22712638 ~ 22713621 (-)
XLOC_013422 si:ch73-113g13.3 coding downstream 37749 22701030 ~ 22701983 (-)
XLOC_013421 si:dkey-11d18.4 coding downstream 43375 22695407 ~ 22696357 (-)
XLOC_013427 BX663522.1 coding upstream 105842 22859479 ~ 22862467 (-)
XLOC_013428 NA coding upstream 433092 23186729 ~ 23195554 (-)
XLOC_013429 NA coding upstream 647493 23401130 ~ 23403453 (-)
XLOC_013430 NA coding upstream 685825 23439462 ~ 23608028 (-)
XLOC_013431 NA coding upstream 932938 23686575 ~ 23833909 (-)
XLOC_013384 BX323829.1 misc downstream 3197501 19542102 ~ 19542231 (-)
XLOC_013420 CR933017.1 non-coding downstream 187418 22550595 ~ 22552314 (-)
XLOC_013417 CT573204.2 non-coding downstream 655846 22083772 ~ 22083886 (-)
XLOC_013411 BX548157.1 non-coding downstream 1019681 21712296 ~ 21720051 (-)
XLOC_013398 BX470160.1 non-coding downstream 1893419 20846190 ~ 20846313 (-)
XLOC_013395 BX470130.1 non-coding downstream 2105809 20633789 ~ 20633923 (-)

Expression


Co-expression Network