XLOC_013429


Basic Information

Item Value
gene id XLOC_013429
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 23401130 ~ 23403453 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027305
CAACTGAAGAAGTAGGGGGGGTGCATGGTAGATGAGCAAGGCATTCTGGGTATGCAAATGAGCCGAATGAGACGCAGTAACAGAGGCATCAGGAGAGACGCCCTGCCAGACACGGCCGATCTAATGAGTAGCCTCTTCTGTCACCAACGCACTGAAGCCTGGGAGAAGCCATCCCAAAGAGGGGGAGGAGAAATCAAGGATGATCTGACCTTGCTCCTGACCCGCTGGTCTCCAAGTCTAAAGCGGACGTAAACGTCTCCTTGTCCACAGTCTGGCATGTCCTGTCCTTCCACCAAGATAACAGTGTAAACGCCTGACCAAACCTGACTCTTTGTGAACCGCCCAAACTGCGCCTGGCTTATCGGTTGACCCTGGAACAGACAATACAGGCAATAATTTACAGAAGTTATTCATCTGACATTTGTTGATCATAAACATGTTTTTCTATGCTTCGATCAAATTAACATTCCATTTGAACATTGTTGCTACAATTCTACGGATTTGATGAAGTGTTGATGAAATGGTGAGAATGACTTGACCTGGAACCAGATTTGACCAAAGAAATGTTTGTGCTGTTTTATAAAATACTGTAGCATTGAGAAAATAGTGCAGTTATTAGTTTACAGCTATGTATAGAAATAACAAATACTTTATTAAGTTAAACAATGTGTCTGCAAAAAGCCTTTGTTGCCAGGTATTTAGTATTTTTCTAACTATCATTTAGTTTAAGAGGGCAAaaactttttcacacagggctctGTAGTTTTGGATTTAGTTTTcccttaataaaaacatttatttcaaaacagCATGAAGAGATGATATGATGATGATGTGATATGAatcattaaagtgtgacaaacatgcaaaaaaaaataagaaatcagtaagcAGCAAACACTTATTCAGACCACTGTATATATAAACTCATTAATTTAGCTTCAGCTAATGCGGAAGTCAC
>TCONS_00027304
CAACTGAAGAAGTAGGGGGGGTGCATGGTAGATGAGCAAGGCATTCTGGGTATGCAAATGAGCCGAATGAGACGCAGTAACAGAGGCATCAGGAGAGACGCCCTGCCAGACACGGCCGATCTAATGAGTAGCCTCTTCTGTCACCAACGCACTGAAGCCTGGGAGAAGCCATCCCAAAGAGGGGGAGGAGAAATCAAGGTAATATCTAAAGCGAGGATGATCTGACCTTGCTCCTGACCCGCTGGTCTCCAAGTCTAAAGCGGACGTAAACGTCTCCTTGTCCACAGTCTGGCATGTCCTGTCCTTCCACCAAGATAACAGTGTAAACGCCTGACCAAACCTGACTCTTTGTGAACCGCCCAAACTGCGCCTGGCTTATCGGTTGACCCTGGAACAGACAATACAGGCAATAATTTACAGAAGTTATTCATCTGACATTTGTTGATCATAAACATGTTTTTCTATGCTTCGATCAAATTAACATTCCATTTGAACATTGTTGCTACAATTCTACGGATTTGATGAAGTGTTGATGAAATGGTGAGAATGACTTGACCTGGAACCAGATTTGACCAAAGAAATGTTTGTGCTGTTTTATAAAATACTGTAGCATTGAGAAAATAGTGCAGTTATTAGTTTACAGCTATGTATAGAAATAACAAATACTTTATTAAGTTAAACAATGTGTCTGCAAAAAGCCTTTGTTGCCAGGTATTTAGTATTTTTCTAACTATCATTTAGTTTAAGAGGGCAAaaactttttcacacagggctctGTAGTTTTGGATTTAGTTTTcccttaataaaaacatttatttcaaaacagCATGAAGAGATGATATGATGATGATGTGATATGAatcattaaagtgtgacaaacatgcaaaaaaaaataagaaatcagtaagcAGCAAACACTTATTCAGACCACTGTATATATAAACTCATTAATTTAGCTTCAGCTAATGCGGAAGTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027305 False 961 lncRNA 0.40 2 23401130 23403453
TCONS_00027304 True 978 lncRNA 0.40 2 23401130 23403453

Neighbor

gene id symbol gene type direction distance location
XLOC_013428 NA coding downstream 205576 23186729 ~ 23195554 (-)
XLOC_013427 BX663522.1 coding downstream 538663 22859479 ~ 22862467 (-)
XLOC_013426 BX088710.1 coding downstream 647493 22739732 ~ 22753637 (-)
XLOC_013425 nudt21 coding downstream 666128 22721551 ~ 22735002 (-)
XLOC_013424 si:ch73-113g13.1 coding downstream 683457 22716708 ~ 22717673 (-)
XLOC_013430 NA coding upstream 36009 23439462 ~ 23608028 (-)
XLOC_013431 NA coding upstream 283122 23686575 ~ 23833909 (-)
XLOC_013432 nr2f2 coding upstream 465197 23868650 ~ 24023261 (-)
XLOC_013433 NA coding upstream 474026 23877479 ~ 23884654 (-)
XLOC_013434 NA coding upstream 644033 24047486 ~ 24083836 (-)
XLOC_013384 BX323829.1 misc downstream 3858899 19542102 ~ 19542231 (-)
XLOC_013420 CR933017.1 non-coding downstream 848816 22550595 ~ 22552314 (-)
XLOC_013417 CT573204.2 non-coding downstream 1317244 22083772 ~ 22083886 (-)
XLOC_013435 si:ch211-147m20.3 non-coding upstream 869975 24273428 ~ 24476910 (-)

Expression


Co-expression Network