XLOC_013431


Basic Information

Item Value
gene id XLOC_013431
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 23686575 ~ 23833909 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027311
GACAGAGCATTTGTTGTGGACGTCCCAGTGTAGCTATGCCCCGTATACTCCAGAAGCACAAGTGTTTCCTTTGAGATAAGCAGAGAAGCGAACGCCTTGGGCAAGTGCCGAGCTGCAGGATGAGAAATGGTGCACCTGTGTGCTGTCTAAAGATAGGTTAGCAGTAGAGGGCCAGAGAGCAGACTCCAGAGGACCCATCCGTCTCAATCGAAGGCTGCAGCTGACACCTTACAAAGAGAACGACACCTGTCTGAAATCCCCCATAGCCAATGTCGACTTTGCCACGGGGGCCGATGCGCAGCGTGCTGAAAACAGACTGGAGGAAACTGATCAGACGTGTTTGTGATAGAGTAACAGAATGGATGTGTCTTAACTCCTGAGACTGAGAGATTGTGATGGAGGGTGACAGACACAGCAGTCCACACAAGGATCTGGAGATTGTGTGCTCAGCTTCTGCCAAGCCTTTACACATAGCCACTGTTGCTCTAGGTCTGCGTGGATGGATGCCCACCCTGTGGAGGAGGGGCTTCCTCATGCCAGCTTGACTGGGAGCTGTTAGGTAAAAGAGAGCAATTGACTTTCGCTTTGAGAGTCActttatgtaatgtttttattcatcttttatctaattaaattactttttttttgttttatttgctttttatttgattttttattttggtttatttattttattttagtttttgttttgtttaattttgaattgttt
>TCONS_00027312
GGACTTCAAAGAGGGAGTGTTCAGTCACATGACGTATTCTTCCGGAACTGAATATGAATTCTATATAGCATTGCGATAAAATCTTAAAATTTAATAGCCAATATTTTACTCTTTCTGACATGTTGATTTGACCGCGAAGTTTTATGGATATCTTTCTACAGAGACGTCCTTGTATACACCTGCCTTCATTCAGCGAACGCCTTGGGCAAGTGCCGAGCTGCAGGATGAGAAATGGTGCACCTGTGTGCTGTCTAAAGATAGGTTAGCAGTAGAGGGCCAGAGAGCAGACTCCAGAGGACCCATCCGTCTCAATCGAAGGCTGCAGCTGACACCTTACAAAGAGAACGACACCTGTCTGAAATCCCCCATAGCCAATGTCGACTTTGCCACGGGGGCCGATGCGCAGCGTGCTGAAAACAGACTGGAGGAAACTGATCAGACGTGTTTGTGATAGAGTAACAGAATGGATGTGTCTTAACTCCTGAGACTGAGAGATTGTGATGGAGGGTGACAGACACAGCAGTCCACACAAGGATCTGGAGATTGTGTGCTCAGCTTCTGCCAAGCCTTTACACATAGCCACTGTTGCTCTAGGTCTGCGTGGATGGATGCCCACCCTGTGGAGGAGGGGCTTCCTCATGCCAGCTTGACTGGGAGCTGTTAGGTAAAAGAGAGCAATTGACTTTCGCTTTGAGAGTCActttatgtaatgtttttattcatcttttatctaattaaattactttttttttgttttatttgctttttatttgattttttattttggtttatttattttattttagtttttgttttgtttaattttgaattgttt
>TCONS_00027313
TATGCCCCGTATACTCCAGAAGCACAAGTGTTTCCTTTGAGATAAGCAGAGAAGCGAACGCCTTGGGCAAGTGCCGAGCTGCAGGATGAGAAATGGTGCACCTGTGTGCTGTCTAAAGATAGGTTAGCAGTAGAGGGCCAGAGAGCAGACTCCAGAGGACCCATCCGTCTCAATCGAAGGCTGCAGCTGACACCTTACAAAGAGGTACAATTAATAAGGACATTATCCGTCGGCAGGCAACAATGGGGGCCTGACGCACAGACACTAACCCCTGGAGGTCTGGAGAGTAAGGGGAGGGATGGCAGGCCTGCAGGCCTTAAGAACAAGCCTCATTAGGAGCAATTTCTCCACAACATGAAATACTATCCCATAATAGAGCCATCTTTTCAAACCATTATCAGCTTCTCTGTTTGGATTGGGTCATTTTCAAGGATCAATCATGCGTTTGTCAGGGCTGCTGAAACATGTTTCTTGTTGGAAGGGAAAAAATGTCTATAGACAAAGGCCCCCCATTTCTTTTTTGTGATAAAATGTGCATCCTTGAATCATTTCTTTATTAAGTTCCCATTATGACACAAGGGTGAAAGCTGACAGATTGCACAATGTCGTCATTTTAAATCATTGTGCTTTGTGAGAAGTATTTATGGAAATGTATAtctttttaattgaattattttagcACTGTTTTAAAGACCAAAAGGCAAGAATTCAATTAATCACTTGTTTactattaatactaataaaagcacagattacaaaaaaagcaaataaaaagtaattttaataatgcaaaagAAAGTGAACTATTTGACTACAATTTCCACTGATTAAAGATGATGCCAGACAAACTTGCAGGGTTTAATCTCATGACacatgcaatatttaaaaataaaatgttttttactgcATCAGAAAGTGCACAACattcaataaacaaaacatatatttcAT
>TCONS_00026520
AGGACTTCAAAGAGGGAGTGTTCAGTCACATGACGTATTCTTCCGGAACTGAATATGAATTCTATATAGCATTGCGATAAAATCTTAAAATTTAATAGCCAATATTTTACTCTTTCTGACATGTTGATTTGACCGCGAAGTTTTATGGATATCTTTCTACAGAGACGTCCTTGTATACACCTGCCTTCATTCAGCGAACGCCTTGGGCAAGTGCCGAGCTGCAGGATGAGAAATGGTGCACCTGTGTGCTGTCTAAAGATAGGTTAGCAGTAGAGGGCCAGAGAGCAGACTCCAGAGGACCCATCCGTCTCAATCGAAGGCTGCAGCTGACACCTTACAAAGAGGTACAATTAATAAGGACATTATCCGTCGGCAGGCAACAATGGGGGCCTGACGCACAGACACTAACCCCTGGAGGTCTGGAGAGTAAGGGGAGGGATGGCAGGCCTGCAGGCCTTAAGAACAAGCCTCATTAGGAGCAATTTCTCCACAACATGAAATACTATCCCATAATAGAGCCATCTTTTCAAACCATTATCAGCTTCTCTGTTTGGATTGGGTCATTTTCAAGGATCAATCATGCGTTTGTCAGGGCTGCTGAAACATGTTTCTTGTTGGAAGGGAAAAAATGTCTATAGACAAAGGCCCCCCATTTCTTTTTTGTGATAAAATGTGCATCCTTGAATCATTTCTTTATTAAGTTCCCATTATGACACAAGGGTGAAAGCTGACAGATTGCACAATGTCGTCATTTTAAATCATTGTGCTTTGTGAGAAGTATTTATGGAAATGTATAtctttttaattgaattattttagcACTGTTTTAAAGACCAAAAGGCAAGAATTCAATTAATCACTTGTTTactattaatactaataaaagcacagattacaaaaaaagcaaataaaaagtaattttaataatgcaaaagAAAGTGAACTATTTGACTACAATTTCCACTGATTAAAGATGATGCCAGACAAACTTGCAGGGTTTAATCTCATGACacatgcaatatttaaaaataaaatgttttttactgcATCAGAAAGTGCACAACattcaataaacaaaacatatatttcAT

Function

GO:

id name namespace
GO:1990918 double-strand break repair involved in meiotic recombination biological_process
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0017148 negative regulation of translation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0040033 negative regulation of translation, ncRNA-mediated biological_process
GO:0045974 regulation of translation, ncRNA-mediated biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0016442 RISC complex cellular_component
GO:0031332 RNAi effector complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0061980 regulatory RNA binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027311 False 730 lncRNA 0.45 3 23686575 23833010
TCONS_00027312 False 835 lncRNA 0.42 3 23686575 23833908
TCONS_00027313 False 951 lncRNA 0.39 2 23830265 23832976
TCONS_00026520 True 1091 lncRNA 0.38 2 23830265 23833909

Neighbor

gene id symbol gene type direction distance location
XLOC_013430 NA coding downstream 78547 23439462 ~ 23608028 (-)
XLOC_013429 NA coding downstream 283122 23401130 ~ 23403453 (-)
XLOC_013428 NA coding downstream 491021 23186729 ~ 23195554 (-)
XLOC_013427 BX663522.1 coding downstream 824108 22859479 ~ 22862467 (-)
XLOC_013426 BX088710.1 coding downstream 932938 22739732 ~ 22753637 (-)
XLOC_013432 nr2f2 coding upstream 34741 23868650 ~ 24023261 (-)
XLOC_013433 NA coding upstream 43570 23877479 ~ 23884654 (-)
XLOC_013434 NA coding upstream 213577 24047486 ~ 24083836 (-)
XLOC_013435 si:ch211-147m20.3 coding upstream 439519 24273428 ~ 24476910 (-)
XLOC_013436 CU855551.1 coding upstream 482272 24316181 ~ 24316299 (-)
XLOC_013384 BX323829.1 misc downstream 4144344 19542102 ~ 19542231 (-)
XLOC_013437 NA non-coding upstream 663715 24497624 ~ 24561884 (-)

Expression


Co-expression Network