XLOC_013432 (nr2f2)


Basic Information

Item Value
gene id XLOC_013432
gene name nr2f2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 23868650 ~ 24023261 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026521
tttttttccttGATGGGTTTACTGGATGGATGACTGCAAGTGCCCCTGGACTTGGCCTCTAAGAGCAAGGCTGCTATTCGGCTTGCTTCAATTTTAACCACATGCCAGGTAACGCTATTTCAGTCAAGAAATAGACTACTGTTTCTCGTCGGTGCGCAACTTTGAACGGACATTCAGACTCTAACCGACCGTGCCGAtcctgaattatttattttaccctCCTAAGTGATAGAGGCACCGTGCTgcgatattatttttttaaacaaagcattCCGAAACCAAAAACGGGgaacaaaaagtttttttaacgTTGACTGATAGATATGGCAATGGTAGTGTGGAGAGGCTCCCAGGACGATGTGGCCGAGACCCATGGCACCCTCTCATCGCAAACCCAAGGAGGACTATCCCTTCCGACCCCTCAACCAGGCCAGCTGGGTCTGACGGCCTCTCAGGTTGCCCCTCCGACCCCTCAGACACCCGTTCAAGGACCCccgaacaacaataacaacacacAGTCAACCCCGACGAACCAGACGACGCAGAGCCAGTCGGAAAAGCAGCAGCCACAGCATATAGAGTGCGTGGTTTGCGGGGACAAATCCAGCGGTAAACACTATGGCCAGTTCACTTGCGAGGGGTGCAAAAGCTTTTTCAAACGGAGCGTACGAAGGAACCTCACTTACACATGCCGTGCCAACAGGAATTGTCCCATTGACCAGCACCATCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGCCTCAAAGTTGGCATGAGACGGGAAGCCGTGCAAAGGGGACGAATGCCACCCACACAGCCACACCATGGTCAGTTCGCCTTGACAAATGGGGACCCACTGCACTGCCATTCCTACTTATCCGGATATATCTCTCTACTACTACGAGCGGAGCCCTACCCAACTTCTCGGTATGGCAGTCAATGCATGCAGCCCAACAACATCATGGGCATCGAGAACATTTGTGAACTGGCAGCCAGGATGCTGTTTAGTGCGGTAGAGTGGGCCAGGAATATTCCCTTCTTCCCAGACCTCCAAATCACCGACCAGGTTGCCCTTTTGAGGTTGACCTGGAGTGAGTTGTTTGTGCTTAACGCTGCTCAATGCTCCATGCCTCTCCATGTGGCTCCACTTCTGGCGGCGGCTGGGCTCCATGCCTCCCCCATGTCTGCGGACAGAGTGGTCGCCTTTATGGACCACATTAGGATCTTCCAAGAACAAGTAGAAAAGCTCAAAGCTTTGCACGTTGACTCTGCTGAATACAGTTGTTTAAAGGCCATCGTTTTATTCACTTCAGATGCGTGTGGCCTGTCagatgtggcccatgtggaaagtTTGCAAGAAAAGTCCCAGTGCGCTTTGGAGGAGTACGTTCGGAGCCAGTATCCCAACCAGCCAACTCGATTTGGGAAGTTATTACTGCGCTTGCCCTCTCTCCGTACAGTCTCGTCTTCGGTCATAGAGCAATTATTTTTCGTCCGATTGGTAGGTAAAACCCCAATTGAAACCCTCATCAGGGATATGTTGCTGTCGGGGAGCAGTTTTAACTGGCCTTATATGTCGATTCAGTAGGCAGAAGGAATGATCAAAGGGGCTGTGACTACAATAGTTAGCGCTTCTTTTGTAGAAGGAAACGGCTGTTACAAGAGTTTACTTTCACGAAGAAAGACTTTCATACAATGACTGTGAATTTTAAAATTGAGACATTCAGTGAAGCCTCGAAATCCAGAGATTGCTCCCAGTGTCATTCTGAACAGTttgttataatgttttttttttttgttgtttgtttgtttgttgttgggtttttttttgtaaaaaaaataaataaatacaaaaatgaagaCATGAATAACCCACTAAAATTAATACAAGACGTAAGAAAAACAGGATTTTTATAATCCTCTCATCAACAGCAAAACTACAAAGTGCATTTAAGCGACAATTTGGAAAGattaagaaaagaagaaaaacgtTCTTTTTTCCAAATTGCTATATTGTCCTGTGTCCATGTATCTATAGCTGTTTTTGTAACTTTTGTTCCTCCTTTCTGGTTCCAAACCGGCCTATGTGATTCTGTAGTATgcagttgttgtttattttttatttttattttttttctaataaccATGACTTCTAAACAGTTCAGTAATGTAAAGACGTTCTTCGAAAATTCGAGAATTAAAACTAAATCCACAGCAATATAGCCTATGCTTAATGCTGCAAGCGCACTTACTCTATTCATGTCCCTCAATGAACAAGAGTGGATATTATTTTCATAATCGACTCGAACCTATATCCACAAAATGCCAGAGCACTATTATTGTGCCAGTGTGTTACGTTTCATGCCACCATTCTACCTGATAAGAcatccccccaaaaaataaatatttctcaaaatggaTGCAGAAGCAATACTCAACTCTGcaaaaaaaactgccatttacTTATGTGCGCCACACCAGTGTTTGCAAAATGTCATCTTATCGGTTTTTGAGAGTTACGACCTGCTTCCATTTTTTATATTTGGATTTTGGGGATGATCGTCGGGTTGTAATGCAAAAAGTATAGCAAAGTATTTGATTTTACAGTTAAAGAAACCCTCCCACTTAAAATTTTCAAATGTATTACAGACGCTTACCTAAGGTTGCGCCCAAGCGAATTTTCGCTCAAGTGTTTAGCCACAGTAAACTGTATTTGTGAACGTGGGGAAATGATGGGTCATCATTCTTATAATGATAAAGCAGCAGTATTAATAAGACGTCCCTAAAAAATACCCCTCAACACTTAAAGCATTAAAGTGCCTGTACAGCGCAAATGTGTTATTAACGGTTACTGAAGTCTATACACCATGGGGAACACGCTTAAAATTTACAAAGTAAGTCTTATAATTGTTCATTTCACTTGAGGGAAAAAACAAGTAGAGGCAGTATTCTTGTAAATATAGGTCAATTCATTTCAAGGACTTTTCTTTATACAGCGTATATGTGATTAAGAATAAAACTGTGGTTGCCAATTTTTTCGGTAATACAAATGTCTTCAAATGAGTGACAGACTTAGCTAGTAGCACTGAAAGATCTGTTTGTAATGTACATACATATTaagagaaatgttttttttttctttctttttcatgtATTTAGACTGTGAATGCATGGCCACAGGTCGCTAACCTATTTTacctttgatatatatatatatatataaatgtaaatgtttttgacTGTATAGATATAATCTGTGCATTCAGTACACTAGCCCTTGTATTTAAAAcgacaaaaaggaaaaaaaagttcgACGATAGGTTGACACTTAACAGGGTGAGCTGGTTTGGAAAGGGGTGGCTATTTTGACTTGGTGTTCTGCTCCTTTTCGGTCTGTAACAGATgccttgtgtgtgtatgtgtgaaagctTGCAATTTCGTCCTTGTTTTGAGGCTTTTCTTCAACACACAAGACACCATGTTGTGATTGGATAAAAAGGGATCATATTGTGTAGTTGATTGAACAGTTATTTTGGGCTGTTCTCTGCCACATATGGACCAGTGAATGATACATGATTGTAATTATGAACAGTTTAAACTGACCCacgtttttatataaatatataaaatatattactgcAGGGTATTGATAACGTAtagatacttttttattattattgattattattaattgcaAGTGATATACgtgagtgtgtgtggaagttTATAGTTGAAAACaattcttgtttgtttgtgttagctTATTGTAAACAAGCATTCTGCTGTAAATTTGTTCTtggtattaaattataatttatgaaTTTGAAATCAAAA
>TCONS_00026522
GTGCGCAACTTTGAACGGACATTCAGACTCTAACCGACCGTGCCGAtcctgaattatttattttaccctCCTAAGTGATAGAGGCACCGTGCTgcgatattatttttttaaacaaagcattCCGAAACCAAAAACGGGgaacaaaaagtttttttaacgTTGACTGATAGATATGGCAATGGTAGTGTGGAGAGGCTCCCAGGACGATGTGGCCGAGACCCATGGCACCCTCTCATCGCAAACCCAAGGAGGACTATCCCTTCCGACCCCTCAACCAGGCCAGCTGGGTCTGACGGCCTCTCAGGTTGCCCCTCCGACCCCTCAGACACCCGTTCAAGGACCCccgaacaacaataacaacacacAGTCAACCCCGACGAACCAGACGACGCAGAGCCAGTCGGAAAAGCAGCAGCCACAGCATATAGAGTGCGTGGTTTGCGGGGACAAATCCAGCGGTAAACACTATGGCCAGTTCACTTGCGAGGGGTGCAAAAGCTTTTTCAAACGGAGCGTACGAAGGAACCTCACTTACACATGCCGTGCCAACAGGAATTGTCCCATTGACCAGCACCATCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGCCTCAAAGTTGGCATGAGACGGGAAGTTTCTCTTTTTACTGCAGCCGTGCAAAGGGGACGAATGCCACCCACACAGCCACACCATGGTCAGTTCGCCTTGACAAATGGGGACCCACTGCACTGCCATTCCTACTTATCCGGATATATCTCTCTACTACTACGAGCGGAGCCCTACCCAACTTCTCGGTATGGCAGTCAATGCATGCAGCCCAACAACATCATGGGCATCGAGAACATTTGTGAACTGGCAGCCAGGATGCTGTTTAGTGCGGTAGAGTGGGCCAGGAATATTCCCTTCTTCCCAGACCTCCAAATCACCGACCAGGTTGCCCTTTTGAGGTTGACCTGGAGTGAGTTGTTTGTGCTTAACGCTGCTCAATGCTCCATGCCTCTCCATGTGGCTCCACTTCTGGCGGCGGCTGGGCTCCATGCCTCCCCCATGTCTGCGGACAGAGTGGTCGCCTTTATGGACCACATTAGGATCTTCCAAGAACAAGTAGAAAAGCTCAAAGCTTTGCACGTTGACTCTGCTGAATACAGTTGTTTAAAGGCCATCGTTTTATTCACTTCAGATGCGTGTGGCCTGTCagatgtggcccatgtggaaagtTTGCAAGAAAAGTCCCAGTGCGCTTTGGAGGAGTACGTTCGGAGCCAGTATCCCAACCAGCCAACTCGATTTGGGAAGTTATTACTGCGCTTGCCCTCTCTCCGTACAGTCTCGTCTTCGGTCATAGAGCAATTATTTTTCGTCCGATTGGTAGGTAAAACCCCAATTGAAACCCTCATCAGGGATATGTTGCTGTCGGGGAGCAGTTTTAACTGGCCTTATATGTCGATTCAGTAGGCAGAAGGAATGATCAAAGGGGCTGTGACTACAATAGTTAGCGCTTCTTTTGTAGAAGGAAACGGCTGTTACAAGAGTTTACTTTCACGAAGAAAGACTTTCATACAATGACTGTGAATTTTAAAATTGAGACATTCAGTGAAGCCTCGAAATCCAGAGATTGCTCCCAGTGTCATTCTGAACAGTttgttataatgttttttttttttgttgtttgtttgtttgttgttgggtttttttttgtaaaaaaaataaataaatacaaaaatgaagaCATGAATAACCCACTAAAATTAATACAAGACGTAAGAAAAACAGGATTTTTATAATCCTCTCATCAACAGCAAAACTACAAAGTGCATTTAAGCGACAATTTGGAAAGattaagaaaagaagaaaaacgtTCTTTTTTCCAAATTGCTATATTGTCCTGTGTCCATGTATCTATAGCTGTTTTTGTAACTTTTGTTCCTCCTTTCTGGTTCCAAACCGGC
>TCONS_00026523
TACATATCGATGATAGTGAAATTTGATgggatttttttaatttcagtcagcggTTTCAGCTGTTACACCAAACCACAGAAATATCACAGGAAGATCGAGCTACTGCACTTCTCCAGATGAGCATCTTGAGAAATGTTCAGCTCAGAGTCAAATCGGCTGACGTTTTAAAgctcaaaagaagaaaaaagaagaagctgGATCTCTTTAAGACATGGTCACAAGATCAGGGCAGGAGGAAGCTGACTAGGGCTATGTTGTTGGGACCAAACAGCCCTTAATGGAGGTGACAAAACAAATGTCCTTAGAGAAAACCTCAAGAGCCAGTTACATGAGCACTTCAGGGCCTGCAGCTGAAGTTTACCCGGACACCGCGTCTTTCAGGGGGCTCGCATAAACATTACACTCTCTGTCTGGCCGTGCAAAGGGGACGAATGCCACCCACACAGCCACACCATGGTCAGTTCGCCTTGACAAATGGGGACCCACTGCACTGCCATTCCTACTTATCCGGATATATCTCTCTACTACTACGAGCGGAGCCCTACCCAACTTCTCGGTATGGCAGTCAATGCATGCAG
>TCONS_00026524
TGACGGCCTCTCAGGTTGCCCCTCCGACCCCTCAGACACCCGTTCAAGGACCCccgaacaacaataacaacacacAGTCAACCCCGACGAACCAGACGACGCAGAGCCAGTCGGAAAAGCAGCAGCCACAGCATATAGAGTGCGTGGTTTGCGGGGACAAATCCAGCGGTAAACACTATGGCCAGTTCACTTGCGAGGGGTGCAAAAGCTTTTTCAAACGGAGCGTACGAAGGAACCTCACTTACACATGCCGTGCCAACAGGAATTGTCCCATTGACCAGCACCATCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGCCTCAAAGTTGGCATGAGACGGGAAGTTTCTCTTTTTACTGCAGCCGTGCAAAGGGGACGAATGCCACCCACACAGCCACACCATGGTCAGTTCGCC
>TCONS_00027316
caaaaaacagcaACGAACAGTAATCTTTGAGGAGAAAAAGTGCAGACGTTGGAAGAAGCCGATTTGTAACGCGCATGCGCCAAGCCTGTTTGTCAATCACTTTCCAACTGAAGTTGCTAAACTAGGCAGAGACAGACAACGGTGTAAAACAACATTACATATCGATGATAGTGAAATTTGATgggatttttttaatttcagtcagcggTTTCAGCTGTTACACCAAACCACAGAAATATCACAGGAAGATCGAGCTACTGCACTTCTCCAGATGAGCATCTTGAGAAATGTTCAGCTCAGAGTCAAATCGGCTGACGTTTTAAAgctcaaaagaagaaaaaagaagaagctgGATCTCTTTAAGACATGGTCACAAGATCAGGACACTAGCAAATATAACTATGTCAGGAC

Function

symbol description
nr2f2 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; nuclear receptor activity; and retinoic acid binding activity. Acts upstream of with a positive effect on venous endothelial cell fate commitment. Acts upstream of or within circulatory system development. Predicted to be located in nucleus. Is expressed in several structures, including brain; head; hindbrain neural keel; midbrain neural tube; and neural crest cell. Human ortholog(s) of this gene implicated in 46,XX sex reversal 5. Orthologous to human NR2F2 (nuclear receptor subfamily 2 group F member 2).

GO:

id name namespace
GO:0060852 obsolete regulation of transcription involved in venous endothelial cell fate commitment biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048856 anatomical structure development biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0060838 lymphatic endothelial cell fate commitment biological_process
GO:0060841 venous blood vessel development biological_process
GO:0005634 nucleus cellular_component
GO:0001972 retinoic acid binding molecular_function
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03310 Nuclear receptors

ZFIN:

id description
ZDB-GENE-990415-252 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; nuclear receptor activity; and retinoic acid binding activity. Acts upstream of with a positive effect on venous endothelial cell fate commitment. Acts upstream of or within circulatory system development. Predicted to be located in nucleus. Is expressed in several structures, including brain; head; hindbrain neural keel; midbrain neural tube; and neural crest cell. Human ortholog(s) of this gene implicated in 46,XX sex reversal 5. Orthologous to human NR2F2 (nuclear receptor subfamily 2 group F member 2).

Ensembl:

ensembl_id ENSDARG00000040926

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026521 False 3838 mRNA 0.40 3 23868650 23875370
TCONS_00026522 False 1953 mRNA 0.46 3 23870402 23875219
TCONS_00026523 False 578 processed_transcript 0.47 5 23873344 24023013
TCONS_00026524 False 419 mRNA 0.54 2 23873455 23874929
TCONS_00027316 True 411 lncRNA 0.40 5 23933175 24023261

Neighbor

gene id symbol gene type direction distance location
XLOC_013431 NA coding downstream 34741 23686575 ~ 23833909 (-)
XLOC_013430 NA coding downstream 260622 23439462 ~ 23608028 (-)
XLOC_013429 NA coding downstream 465197 23401130 ~ 23403453 (-)
XLOC_013428 NA coding downstream 673096 23186729 ~ 23195554 (-)
XLOC_013427 BX663522.1 coding downstream 1006183 22859479 ~ 22862467 (-)
XLOC_013434 NA coding upstream 24225 24047486 ~ 24083836 (-)
XLOC_013435 si:ch211-147m20.3 coding upstream 250167 24273428 ~ 24476910 (-)
XLOC_013436 CU855551.1 coding upstream 292920 24316181 ~ 24316299 (-)
XLOC_013437 NA coding upstream 474363 24497624 ~ 24561884 (-)
XLOC_013438 NA coding upstream 713098 24736359 ~ 24759440 (-)
XLOC_013384 BX323829.1 misc downstream 4326419 19542102 ~ 19542231 (-)

Expression


Co-expression Network